Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10i01
         (821 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50806-5|CAB60297.2| 1209|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z50806-4|CAB60296.2| 1214|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z50806-3|CAA90691.2| 1224|Caenorhabditis elegans Hypothetical pr...    29   3.0  
M13235-1|AAA28129.1|  552|Caenorhabditis elegans protein ( C.ele...    29   3.0  
U67954-1|AAB52605.2|  826|Caenorhabditis elegans Hypothetical pr...    28   7.0  

>Z50806-5|CAB60297.2| 1209|Caenorhabditis elegans Hypothetical
           protein M79.1c protein.
          Length = 1209

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 20/53 (37%), Positives = 23/53 (43%)
 Frame = -1

Query: 302 MRQYSNKTIVNVFDPFSGSIRMKREIGCDAPMVYR*YLQ*LN*SIVLAPRFKD 144
           M  Y    + NV+       RM    GC  P VYR  LQ  N S    PRF+D
Sbjct: 491 MAPYPGVELSNVYGLLENGFRMDGPQGCP-PSVYRLMLQCWNWSPSDRPRFRD 542


>Z50806-4|CAB60296.2| 1214|Caenorhabditis elegans Hypothetical
           protein M79.1b protein.
          Length = 1214

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 20/53 (37%), Positives = 23/53 (43%)
 Frame = -1

Query: 302 MRQYSNKTIVNVFDPFSGSIRMKREIGCDAPMVYR*YLQ*LN*SIVLAPRFKD 144
           M  Y    + NV+       RM    GC  P VYR  LQ  N S    PRF+D
Sbjct: 496 MAPYPGVELSNVYGLLENGFRMDGPQGCP-PSVYRLMLQCWNWSPSDRPRFRD 547


>Z50806-3|CAA90691.2| 1224|Caenorhabditis elegans Hypothetical
           protein M79.1a protein.
          Length = 1224

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 20/53 (37%), Positives = 23/53 (43%)
 Frame = -1

Query: 302 MRQYSNKTIVNVFDPFSGSIRMKREIGCDAPMVYR*YLQ*LN*SIVLAPRFKD 144
           M  Y    + NV+       RM    GC  P VYR  LQ  N S    PRF+D
Sbjct: 506 MAPYPGVELSNVYGLLENGFRMDGPQGCP-PSVYRLMLQCWNWSPSDRPRFRD 557


>M13235-1|AAA28129.1|  552|Caenorhabditis elegans protein (
           C.elegans DNA homologousto the v-abl oncogene. ).
          Length = 552

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 20/53 (37%), Positives = 23/53 (43%)
 Frame = -1

Query: 302 MRQYSNKTIVNVFDPFSGSIRMKREIGCDAPMVYR*YLQ*LN*SIVLAPRFKD 144
           M  Y    + NV+       RM    GC  P VYR  LQ  N S    PRF+D
Sbjct: 357 MAPYPGVELSNVYGLLENGFRMDGPQGCP-PSVYRLMLQCWNWSPSDRPRFRD 408


>U67954-1|AAB52605.2|  826|Caenorhabditis elegans Hypothetical
           protein F41D9.1 protein.
          Length = 826

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 815 NFGDSESLSDKEHSAESQEDGVHKIDLEAF 726
           N GD E  S  +H +E  E+  HK+ L ++
Sbjct: 86  NLGDEEETSSAKHLSEPLENSTHKLKLISY 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,157,005
Number of Sequences: 27780
Number of extensions: 271509
Number of successful extensions: 627
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)