Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10h18
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    40   4e-04
SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ...    37   0.003
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    28   1.3  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    26   7.0  
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ...    25   9.2  

>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 39.9 bits (89), Expect = 4e-04
 Identities = 24/86 (27%), Positives = 43/86 (50%)
 Frame = -2

Query: 521 QLLSYYIIYS*FKMKNDWFSLCDIT*FGLRLLCN*PHFSLVPEAKAELKIVQNFTLKEVY 342
           QLL YY IY  FK+  DW  L +     ++ + +  HF L+ +    L+I  N+  +E +
Sbjct: 550 QLLEYYDIYLKFKLLADWRLLTNPV-LQIQEISDYCHFKLLKKVNRNLQIKTNYPTQEFH 608

Query: 341 VLLSILNLSFVGIENFHFFIHSGSEF 264
           +L   + +  + I    +F+H  S +
Sbjct: 609 LLRPTIKI--LQISKHEYFLHFSSSY 632


>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 481

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 21/74 (28%), Positives = 33/74 (44%)
 Frame = +1

Query: 1   LVLYEFFRKNSNTNSLRITNIFTYMRY*LAATQRFSID*KQ*CQLLGSAHQFNKSQMSAL 180
           + LY FF    +T  ++   +   M      TQ+      Q  QL G AH+FN+   + L
Sbjct: 47  IYLYSFFSSGVHTRGIQFYRVSAVMELLQQWTQQAKAALTQARQLCGDAHKFNEDAKTDL 106

Query: 181 HNQLQNHMILHLIA 222
            N ++ H  L  +A
Sbjct: 107 RNSIKQHQQLKELA 120


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +2

Query: 119 NNNVNY*VPHTNLTSHKCQRYIISFKIT*FYI**HNVYRSQKYTT*LCQTHS 274
           NN+ NY V       H+C++++ + K   +Y+    +++ +KY T   Q  S
Sbjct: 504 NNDENYLVNQREDLIHQCKKFLHTLKTARYYLETVQLHQLKKYVTYFSQIWS 555


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 280 CMKKWKFSIPTKLKFKIDNKTYTSFN 357
           C   WK++I     F+IDN  +  FN
Sbjct: 334 CRDLWKWTIENPFGFQIDNYKWKLFN 359


>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 249 LHNYVKLTPAVYEKVE 296
           LH  +KLTP  YE +E
Sbjct: 376 LHTIIKLTPMTYETIE 391


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,103,461
Number of Sequences: 5004
Number of extensions: 62706
Number of successful extensions: 124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)