Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10h17
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    27   3.0  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    27   3.0  
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    26   5.2  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    25   9.0  
SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase |...    25   9.0  

>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = +2

Query: 134 FNPISASSTIAIFSVYTGLR-TFNFYYHI*WQNIRSQVTDNKKCAC 268
           F PI     ++ FS    L+ T  +YY   WQN+  Q     K  C
Sbjct: 596 FRPI-IDLNVSDFSTLDSLKFTVTYYYKSNWQNVSLQCVRRNKFMC 640


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
 Frame = +3

Query: 78  PKVFRHNICLIGKSKYNLNLTPFRLRVRLQY--SLYTQDYELSISIIIFN--GKILDHKL 245
           P ++  ++C++   KYN      R+R R  +  +L T   EL I   IFN  GK  D  +
Sbjct: 763 PDLYSMSLCVVFFHKYNFQDEVLRMRRRNMFMCALMTYMQELDIVSPIFNSPGKSKDSPM 822

Query: 246 LI 251
            +
Sbjct: 823 YV 824


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 480 NLSHFYFTLLSFIVEVLYIKFLIQILYTFYHFHFNEVTLLMLI 608
           NLS+F  TLL   +    +   + I Y   +F  N + ++M+I
Sbjct: 359 NLSNFQLTLLGMGISSFALLGTVIIPYLTEYFQLNSLQVVMII 401


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 102 CLIGKSKYNLNLTPFRLRVRLQYSLYTQDYELSISI 209
           C +GK K  L+L P  L V  QY+  + D  L + +
Sbjct: 528 CSVGKVKPILSLQPMILEVLSQYASKSSDEALVLLV 563


>SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +1

Query: 328 TRSPT-SKIPCILGSERSSGLPW 393
           +R PT S IPC + +ER  G+P+
Sbjct: 313 SRCPTYSAIPCFIDTERWRGVPF 335


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,289,875
Number of Sequences: 5004
Number of extensions: 42641
Number of successful extensions: 82
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)