Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10h15
(837 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0491 - 18707721-18708179 33 0.21
01_07_0232 + 42182942-42183490,42183593-42183661,42184320-421844... 32 0.49
04_01_0261 + 3516461-3516629,3517729-3517823,3518724-3518834,351... 32 0.65
06_02_0086 - 11567390-11567634,11568316-11568341,11571082-115712... 31 1.1
12_02_0548 - 20315842-20316017,20316382-20316574 31 1.5
12_01_1023 + 10458092-10458397,10459126-10459254,10459335-104595... 31 1.5
11_06_0291 + 22008412-22012284 30 2.6
09_04_0151 - 15154063-15154296,15155616-15155660,15155749-151558... 29 3.5
02_02_0240 + 8196140-8198248,8198381-8198650 29 3.5
10_08_0442 + 17957358-17958075,17958156-17958242,17958547-179586... 29 4.6
05_04_0048 - 17493775-17494431,17494506-17494801,17494851-174949... 29 4.6
01_06_0848 + 32426550-32426613,32427013-32427167,32428470-324285... 29 4.6
11_06_0745 + 26857968-26859955,26860697-26860712 29 6.1
10_02_0094 - 5228472-5228703,5229040-5229133,5230627-5230675,523... 29 6.1
07_03_1473 + 26756338-26757583,26759067-26759472,26760867-267609... 29 6.1
06_03_1400 + 29901835-29902136,29902913-29902934 29 6.1
06_03_0630 + 22926652-22928133 29 6.1
05_05_0225 - 23437454-23437793,23438348-23440573,23440771-23441603 29 6.1
07_01_0811 - 6377328-6377628,6377708-6377878,6377961-6378145,637... 28 8.0
03_05_0137 + 21165151-21165506,21166889-21166986,21167078-211671... 28 8.0
>07_03_0491 - 18707721-18708179
Length = 152
Score = 33.5 bits (73), Expect = 0.21
Identities = 19/38 (50%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -2
Query: 155 LLEKNTFERSSR--SSKRPGTLSSRSGRPRPLQKXGYR 48
LL N +R SR S RPGT ++RS RPRP G R
Sbjct: 52 LLRANQAQRRSRTPSLSRPGTAAARSSRPRPGSAVGGR 89
>01_07_0232 +
42182942-42183490,42183593-42183661,42184320-42184451,
42184547-42184600,42184714-42184758,42185383-42185522,
42185777-42185902,42185985-42186002,42186631-42187276,
42188121-42188843
Length = 833
Score = 32.3 bits (70), Expect = 0.49
Identities = 22/66 (33%), Positives = 30/66 (45%)
Frame = +3
Query: 417 LPRDINSRVYCMTCICKRVDATYDVPV*SRLFHDCPETVAQLHFLYRKWKRDPTPCDERL 596
+P N+ C CI RVD VP + + H CP + LH R W R E +
Sbjct: 444 VPMAPNAANTCALCIRSRVDIAAGVPRHADVVH-CPSCSSYLH-PPRLWLRAAPESPELM 501
Query: 597 SMVCRR 614
S++ RR
Sbjct: 502 SLLLRR 507
>04_01_0261 +
3516461-3516629,3517729-3517823,3518724-3518834,
3519179-3519213,3519864-3519954,3520124-3520196,
3521127-3521257,3524325-3524720
Length = 366
Score = 31.9 bits (69), Expect = 0.65
Identities = 21/78 (26%), Positives = 43/78 (55%)
Frame = -1
Query: 252 LYREYEHIEKCIKEGPYQPHLEQRKEELSKELASREEHIRKVVKEFKASGDSEQPLRASA 73
L ++YE++ K K L++ KE++ KE+ E I+++ ++ +S S + L +A
Sbjct: 193 LTKKYENLTK--KRNEDLAKLKKEKEDMEKEIRGLRERIKELEEQVISSSSSGKSLTNNA 250
Query: 72 STTEXRVQALNIQIKXSE 19
+ E ++ +N QI +E
Sbjct: 251 A--ENIMEGINKQILGAE 266
>06_02_0086 -
11567390-11567634,11568316-11568341,11571082-11571224,
11571569-11571682,11571855-11572888,11574723-11575047,
11576843-11577124
Length = 722
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -1
Query: 717 RPNIPFIVSKSTAPSHN-IGVNIQQVLNGLKVQQPLSGIPSTIAHHMGLG 571
RP + FI +ST P+H+ I +QQVL+ V P PST GLG
Sbjct: 255 RPGVSFIQRQSTFPNHSAIAKTVQQVLH-QPVNHPNWIPPSTEYMRSGLG 303
>12_02_0548 - 20315842-20316017,20316382-20316574
Length = 122
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = -1
Query: 594 IAHHMGLGHVSTYGTRSATAQPSLDNREINVIKLGHRMLRLPSYKYMSYNRLLNLYR 424
+A+ GLGH S YG + + +++ +I G +LRL + S+ ++LYR
Sbjct: 50 VAYMHGLGH-SLYGWKGISLLGEVNHASTRLITRGDVVLRLRGSRACSFRSQIDLYR 105
>12_01_1023 +
10458092-10458397,10459126-10459254,10459335-10459553,
10459649-10459987,10460095-10460199,10460697-10460807,
10461438-10461688,10462023-10462146,10462440-10462716,
10463212-10463357,10463449-10463598,10463678-10463910,
10464246-10464375,10464406-10464510,10464636-10464914
Length = 967
Score = 30.7 bits (66), Expect = 1.5
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Frame = -1
Query: 474 LPSYKYMSYNRLLNLYREGDGIVPRFLKAINRPHYFYTSMYNSLTADRDDFDGATSKGRG 295
L S ++SYN LLN R DG + L+ H FY + + D + R
Sbjct: 485 LNSAFHLSYNMLLNQIRCEDGDPEKLLR-----HSFYQFQADRVLPDLEKQVKELELERN 539
Query: 294 GS-QEAKQSLAEYASLYREYEHIEKCIKEGPYQP 196
E +++L Y L ++Y++++K +++ + P
Sbjct: 540 SMIIEEEENLKSYYDLLQQYKNLKKDVRDIVHSP 573
>11_06_0291 + 22008412-22012284
Length = 1290
Score = 29.9 bits (64), Expect = 2.6
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Frame = -1
Query: 336 DRDDFDGATSKGRGGSQEAKQSLAEYASLYREYEHIEKCIKEGPYQPHLEQRKEELSKEL 157
+ ++ D + G G +E + + +E H EK + + E+RKEE +KE
Sbjct: 426 EENEKDKGEADGEGEQEEEMKDKEKGGEERKEEPHHEKQEHKKEKEVKEEERKEEQNKEK 485
Query: 156 ASREEHIRKVV-----KEFKASGDSE 94
RE K V KE K GD +
Sbjct: 486 EEREGTEEKQVGGGEKKEEKEDGDDD 511
>09_04_0151 -
15154063-15154296,15155616-15155660,15155749-15155820,
15155932-15156024,15156282-15156351,15156716-15156912,
15156946-15157215,15158620-15158757,15158841-15158930,
15159041-15159247,15159987-15160154,15160300-15160503,
15160584-15160670,15160748-15160861,15161689-15161835,
15161914-15162063,15162211-15162276,15162376-15162480,
15162625-15162798,15162930-15163154,15163534-15163590,
15163858-15164019,15164234-15164302,15164391-15164471,
15164823-15164925,15165011-15165156,15165285-15165359,
15165441-15165508,15165586-15165667,15165745-15165858,
15166358-15166476,15166692-15166781,15166862-15166988
Length = 1382
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/57 (26%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Frame = -1
Query: 285 EAKQ----SLAEYASLYREYEHIEKCIKEGPYQPHLEQRKEELSKELASREEHIRKV 127
EAKQ + +++S+ R+YE+I C++E LE K+ L ++ +++ ++++
Sbjct: 721 EAKQFVCGDITQFSSVIRDYENISNCLRE--KLSKLEMEKKILDEQSLDQKDELQRL 775
>02_02_0240 + 8196140-8198248,8198381-8198650
Length = 792
Score = 29.5 bits (63), Expect = 3.5
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = -1
Query: 294 GSQEAKQSLAEYAS-LYREYEHIE-KCIKEGPYQPHLEQRKEELSKELASREEHIRKVVK 121
G +EA LAE A + E + E + ++EG LE+ + + +LA EE ++VK
Sbjct: 339 GEEEAAMELAEPAKDVEMEMDEEEIQLVEEGMRAARLEENEGGVQVKLAGDEEPPMRIVK 398
Query: 120 EFK 112
+K
Sbjct: 399 NYK 401
>10_08_0442 +
17957358-17958075,17958156-17958242,17958547-17958647,
17958766-17958834,17958989-17959156
Length = 380
Score = 29.1 bits (62), Expect = 4.6
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Frame = -1
Query: 333 RDDFDGATSKGRGGSQEAKQSLAEYASLYREYEHIEKCIKEGPYQPHLEQRKEELSKELA 154
R+D + R +Q+ ++ EY E++ K+G + KE KE A
Sbjct: 117 RNDDKSLRREHRSKNQDKQEPSREYPRYDGEHDKYSDGKKQGHTSRRYPEEKESKYKETA 176
Query: 153 SREEHIRK-VVKEFKASGDSEQP 88
+EE ++K KE + +P
Sbjct: 177 KQEEALKKRTGKEIEKMSSVAEP 199
>05_04_0048 -
17493775-17494431,17494506-17494801,17494851-17494958,
17495463-17495544,17495561-17495740
Length = 440
Score = 29.1 bits (62), Expect = 4.6
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Frame = -1
Query: 192 LEQRKEELSKELASREEHI---RKVVKEFKASGDSEQPLRASAST 67
LEQ+ EELSK+L S E+ + ++KE +A+ Q RA+A T
Sbjct: 252 LEQQVEELSKKLCSTEDELEVTNAMLKETQAAMLEAQSDRATAIT 296
>01_06_0848 +
32426550-32426613,32427013-32427167,32428470-32428526,
32428877-32428930,32429349-32429418,32429951-32432034
Length = 827
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -1
Query: 657 NIQQVLNGLKVQQPLSGIPSTIAHHMGLGHVSTYGTRSATAQPSL 523
+I V GL++ P +PS+ H GL H YG + P+L
Sbjct: 231 SIPSVGAGLQMGSPSMSLPSSSYHMAGLSHGLPYGGSVSFGSPNL 275
>11_06_0745 + 26857968-26859955,26860697-26860712
Length = 667
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -1
Query: 648 QVLNGLKVQQPLSGIPSTIAHHMGLGHVS 562
Q L LKV + G+PS I H GL H+S
Sbjct: 298 QYLETLKVDGNIDGVPSDIIHLPGLLHLS 326
>10_02_0094 -
5228472-5228703,5229040-5229133,5230627-5230675,
5231229-5231321,5231404-5231635,5232416-5232506,
5232693-5232784,5232862-5232970,5233331-5233430,
5233614-5233754,5233846-5234010,5234088-5234279,
5234409-5234537,5234619-5234734,5234821-5234965,
5235039-5235102,5235241-5235463,5235584-5236244,
5236909-5237250
Length = 1089
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -1
Query: 402 RFLKAINRPHYFYTSMYNSLTADRDDFDGA 313
RF K IN P +M S+ A+ DFDGA
Sbjct: 451 RFCKLINNPKMSTFNMLLSVCANSQDFDGA 480
>07_03_1473 +
26756338-26757583,26759067-26759472,26760867-26760930,
26760975-26761055,26763350-26763588,26763689-26763947,
26764359-26764538,26764937-26765092,26765174-26765350
Length = 935
Score = 28.7 bits (61), Expect = 6.1
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 604 YAGEGLLHFQTIQNLLYVYADVMRRRGALAHNERYI 711
Y + L HF T ++++ Y D++R R AL + ++
Sbjct: 851 YIRDCLDHFNTTRHMILYYEDIVRNRNALFQVQEFL 886
>06_03_1400 + 29901835-29902136,29902913-29902934
Length = 107
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = -3
Query: 160 AGF*RRTHSKGRQGVQSVRGL*AAAPGVRVHYRRXGTG 47
AG R GR GV++ L AAP R HY G G
Sbjct: 15 AGARRGGGGGGRCGVRASAALAVAAPAARTHYEVLGVG 52
>06_03_0630 + 22926652-22928133
Length = 493
Score = 28.7 bits (61), Expect = 6.1
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Frame = -1
Query: 468 SYKYMSYNRLLNLYREGDGIVPRFLKAINRPHYFYT---SMYNSLTADRDDFDGATSKGR 298
S Y+S+ LL++ + + + R L+A RP+ + ++ T D A + G
Sbjct: 291 SVVYVSFGTLLSMSKRQEEEMRRGLEATGRPYLWVARQGAVDGGATLDSAPTPAADAGGG 350
Query: 297 GGSQEAKQSLAEYASLYREYEH 232
GG +A+ + E+ + H
Sbjct: 351 GGEGDAQGMVVEWCDQMKVLSH 372
>05_05_0225 - 23437454-23437793,23438348-23440573,23440771-23441603
Length = 1132
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -1
Query: 678 PSHNIGVNIQQVLNGLKVQQPLSGIPSTIAHHMGLGHVS 562
P+H G+ Q L LK+ + +PS I H GL H+S
Sbjct: 621 PTHMQGL---QYLEALKIDGKIDAVPSDIVHLPGLLHLS 656
>07_01_0811 -
6377328-6377628,6377708-6377878,6377961-6378145,
6378255-6378797,6378879-6379304,6379383-6380116,
6380205-6380334
Length = 829
Score = 28.3 bits (60), Expect = 8.0
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Frame = -1
Query: 309 SKGRGGSQEAKQSLAEYASLYREYEHIEKCIKEGPYQPHLE-QRKEELSKELASR-EEHI 136
++G G K L +Y+S YR+++ + K ++ + L+ + +EL + +R EE +
Sbjct: 326 TRGIGSDVPWKHGLPQYSSQYRKWK-VSKEERDARLKAELKVEVIQELEASMNARVEERV 384
Query: 135 RKVVKEFKAS---GDSEQPLRASASTTEXRVQALNI 37
KV+ + S S R+S ++TE L I
Sbjct: 385 NKVLADMNRSVQHDASPSQHRSSCASTEVPAPGLPI 420
>03_05_0137 +
21165151-21165506,21166889-21166986,21167078-21167143,
21169401-21169465,21169680-21169721
Length = 208
Score = 28.3 bits (60), Expect = 8.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 738 IARRLASSVTRPWATRSDGFGTSRGAGNGYPP 833
+A +S+ PWA S G T+ G+GY P
Sbjct: 30 LAAAASSAYLAPWAPPSRGAKTASSGGSGYSP 61
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,157,296
Number of Sequences: 37544
Number of extensions: 547626
Number of successful extensions: 1790
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1789
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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