Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10h15
(837 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D38541-1|BAA07544.1| 284|Caenorhabditis elegans CeTMII protein. 35 0.062
D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein. 35 0.062
D38539-2|BAA07541.1| 284|Caenorhabditis elegans CeTMII protein. 35 0.062
D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein. 35 0.062
AL132877-4|CAC70112.1| 284|Caenorhabditis elegans Hypothetical ... 35 0.062
AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical ... 35 0.062
U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin conju... 31 0.77
AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical ... 31 0.77
U88180-1|AAB42294.1| 203|Caenorhabditis elegans Hypothetical pr... 30 1.8
AF047655-6|AAC04398.1| 195|Caenorhabditis elegans Hypothetical ... 30 1.8
Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical pr... 30 2.3
Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical pr... 30 2.3
AC006617-11|AAF39766.2| 356|Caenorhabditis elegans Serpentine r... 30 2.3
U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos... 29 3.1
AF106592-4|AAK21366.1| 786|Caenorhabditis elegans Hypothetical ... 29 3.1
Z93395-2|CAB07705.1| 905|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z83112-5|CAB05541.1| 905|Caenorhabditis elegans Hypothetical pr... 29 4.1
U00065-9|AAA50738.2| 1009|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z81073-9|CAB03030.2| 583|Caenorhabditis elegans Hypothetical pr... 29 5.4
Z79752-7|CAC70084.1| 583|Caenorhabditis elegans Hypothetical pr... 29 5.4
Z68108-14|CAA92133.3| 2066|Caenorhabditis elegans Hypothetical p... 28 7.2
Z68106-9|CAE17838.1| 551|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z49207-10|CAE17907.1| 551|Caenorhabditis elegans Hypothetical p... 28 7.2
U10402-9|AAA19065.1| 892|Caenorhabditis elegans Gro-1 operon ge... 28 7.2
AY389809-1|AAR28681.1| 909|Caenorhabditis elegans zinc finger t... 28 7.2
AY052769-1|AAL14108.1| 885|Caenorhabditis elegans GOP-1 protein. 28 7.2
Z99281-12|CAB16521.1| 649|Caenorhabditis elegans Hypothetical p... 28 9.5
AL132949-5|CAB61074.1| 144|Caenorhabditis elegans Hypothetical ... 28 9.5
>D38541-1|BAA07544.1| 284|Caenorhabditis elegans CeTMII protein.
Length = 284
Score = 35.1 bits (77), Expect = 0.062
Identities = 28/116 (24%), Positives = 50/116 (43%)
Frame = -1
Query: 363 TSMYNSLTADRDDFDGATSKGRGGSQEAKQSLAEYASLYREYEHIEKCIKEGPYQPHLEQ 184
T + L ++D ATSK + +++ AE ASL R +E+ ++ + +
Sbjct: 51 TQTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIAT 110
Query: 183 RKEELSKELASREEHIRKVVKEFKASGDSEQPLRASASTTEXRVQALNIQIKXSEI 16
K E + E +RKV+ E ++ D E+ A E ++ A K E+
Sbjct: 111 EKLEEATHNVDESERVRKVM-ENRSLQDEERANTVEAQLKEAQLLAEEADRKYDEV 165
>D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 35.1 bits (77), Expect = 0.062
Identities = 28/116 (24%), Positives = 50/116 (43%)
Frame = -1
Query: 363 TSMYNSLTADRDDFDGATSKGRGGSQEAKQSLAEYASLYREYEHIEKCIKEGPYQPHLEQ 184
T + L ++D ATSK + +++ AE ASL R +E+ ++ + +
Sbjct: 51 TQTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIAT 110
Query: 183 RKEELSKELASREEHIRKVVKEFKASGDSEQPLRASASTTEXRVQALNIQIKXSEI 16
K E + E +RKV+ E ++ D E+ A E ++ A K E+
Sbjct: 111 EKLEEATHNVDESERVRKVM-ENRSLQDEERANTVEAQLKEAQLLAEEADRKYDEV 165
>D38539-2|BAA07541.1| 284|Caenorhabditis elegans CeTMII protein.
Length = 284
Score = 35.1 bits (77), Expect = 0.062
Identities = 28/116 (24%), Positives = 50/116 (43%)
Frame = -1
Query: 363 TSMYNSLTADRDDFDGATSKGRGGSQEAKQSLAEYASLYREYEHIEKCIKEGPYQPHLEQ 184
T + L ++D ATSK + +++ AE ASL R +E+ ++ + +
Sbjct: 51 TQTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIAT 110
Query: 183 RKEELSKELASREEHIRKVVKEFKASGDSEQPLRASASTTEXRVQALNIQIKXSEI 16
K E + E +RKV+ E ++ D E+ A E ++ A K E+
Sbjct: 111 EKLEEATHNVDESERVRKVM-ENRSLQDEERANTVEAQLKEAQLLAEEADRKYDEV 165
>D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 35.1 bits (77), Expect = 0.062
Identities = 28/116 (24%), Positives = 50/116 (43%)
Frame = -1
Query: 363 TSMYNSLTADRDDFDGATSKGRGGSQEAKQSLAEYASLYREYEHIEKCIKEGPYQPHLEQ 184
T + L ++D ATSK + +++ AE ASL R +E+ ++ + +
Sbjct: 51 TQTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIAT 110
Query: 183 RKEELSKELASREEHIRKVVKEFKASGDSEQPLRASASTTEXRVQALNIQIKXSEI 16
K E + E +RKV+ E ++ D E+ A E ++ A K E+
Sbjct: 111 EKLEEATHNVDESERVRKVM-ENRSLQDEERANTVEAQLKEAQLLAEEADRKYDEV 165
>AL132877-4|CAC70112.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1d protein.
Length = 284
Score = 35.1 bits (77), Expect = 0.062
Identities = 28/116 (24%), Positives = 50/116 (43%)
Frame = -1
Query: 363 TSMYNSLTADRDDFDGATSKGRGGSQEAKQSLAEYASLYREYEHIEKCIKEGPYQPHLEQ 184
T + L ++D ATSK + +++ AE ASL R +E+ ++ + +
Sbjct: 51 TQTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIAT 110
Query: 183 RKEELSKELASREEHIRKVVKEFKASGDSEQPLRASASTTEXRVQALNIQIKXSEI 16
K E + E +RKV+ E ++ D E+ A E ++ A K E+
Sbjct: 111 EKLEEATHNVDESERVRKVM-ENRSLQDEERANTVEAQLKEAQLLAEEADRKYDEV 165
>AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1a protein.
Length = 284
Score = 35.1 bits (77), Expect = 0.062
Identities = 28/116 (24%), Positives = 50/116 (43%)
Frame = -1
Query: 363 TSMYNSLTADRDDFDGATSKGRGGSQEAKQSLAEYASLYREYEHIEKCIKEGPYQPHLEQ 184
T + L ++D ATSK + +++ AE ASL R +E+ ++ + +
Sbjct: 51 TQTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIAT 110
Query: 183 RKEELSKELASREEHIRKVVKEFKASGDSEQPLRASASTTEXRVQALNIQIKXSEI 16
K E + E +RKV+ E ++ D E+ A E ++ A K E+
Sbjct: 111 EKLEEATHNVDESERVRKVM-ENRSLQDEERANTVEAQLKEAQLLAEEADRKYDEV 165
>U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein17 protein.
Length = 679
Score = 31.5 bits (68), Expect = 0.77
Identities = 15/72 (20%), Positives = 35/72 (48%)
Frame = -1
Query: 366 YTSMYNSLTADRDDFDGATSKGRGGSQEAKQSLAEYASLYREYEHIEKCIKEGPYQPHLE 187
++ +++ + +DD +K + + + + ++ L Y ++ P+ PHL
Sbjct: 349 HSGLHSKMQGPKDDETIYKNKMQELQLQTAKFIGDFGKLCVPYVFRKEAKNINPFSPHLR 408
Query: 186 QRKEELSKELAS 151
R + ++KELAS
Sbjct: 409 DRTKRIAKELAS 420
>AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical
protein Y80D3A.8 protein.
Length = 1293
Score = 31.5 bits (68), Expect = 0.77
Identities = 19/62 (30%), Positives = 34/62 (54%)
Frame = -1
Query: 204 YQPHLEQRKEELSKELASREEHIRKVVKEFKASGDSEQPLRASASTTEXRVQALNIQIKX 25
Y+ E+RKEE ++E REE K++ E K + E+ + A E +++ LN +++
Sbjct: 889 YRKREEKRKEEEAEEERKREE--EKLIAERKRIEEVEEQRKREAEDKE-KIEQLNAKVRE 945
Query: 24 SE 19
E
Sbjct: 946 KE 947
>U88180-1|AAB42294.1| 203|Caenorhabditis elegans Hypothetical
protein T27A3.4 protein.
Length = 203
Score = 30.3 bits (65), Expect = 1.8
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Frame = -2
Query: 236 SISRNASKK--VRTSRTLSNGRRNYLKSWLLEKNTFERSSRSSKRPGTLSSRSG-RPRPL 66
S R++S++ VR+ S GRR+ + + + RSS+ S+ +RSG R
Sbjct: 90 STRRSSSRRSVVRSVSRGSKGRRSSSRGSVYGRTGRSRSSKRSRSRSRPRTRSGSRSSSR 149
Query: 65 QKXGYRHSTFKLXRRRSSTE 6
+ G R S+ + R RSS++
Sbjct: 150 SRSGSRRSSRRRSRHRSSSK 169
>AF047655-6|AAC04398.1| 195|Caenorhabditis elegans Hypothetical
protein C17B7.4 protein.
Length = 195
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Frame = -1
Query: 243 EYEHIEKCIKE-GPYQPHLEQRK--EELSKELASREEHIRKVVKEFKASGDSEQPLRASA 73
E + +C K GP+ + + K +EL K + ++ ++K+V E DS++ L
Sbjct: 123 ELKPAPECYKTWGPFDGFIIKDKLPDELCKNMVGKDNCMKKLVSETCGEEDSQKLLNMLK 182
Query: 72 STTEXR 55
+TTE R
Sbjct: 183 NTTEYR 188
>Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical
protein F29G6.3c protein.
Length = 1453
Score = 29.9 bits (64), Expect = 2.3
Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 6/109 (5%)
Frame = -1
Query: 399 FLKAINRPHYFYTSMYNSL-TADRDDFDGATSKGRGGSQEAKQSLAEYASLY-----REY 238
+ K INR H+F S SL R+ F + E K E A Y
Sbjct: 672 YFKEINRAHHFVPSTPPSLFNNKRESFHHHSFIPNSLEAERKSRSVERAHHYLPDSPANV 731
Query: 237 EHIEKCIKEGPYQPHLEQRKEELSKELASREEHIRKVVKEFKASGDSEQ 91
+ K I+E Y P LE+R + L ++ E H +V+ K + D +Q
Sbjct: 732 KDQRKIIREHHYVP-LEKRSQSLDLKVVHPEHHYVPLVR--KTTEDHQQ 777
>Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical
protein F29G6.3b protein.
Length = 1785
Score = 29.9 bits (64), Expect = 2.3
Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 6/109 (5%)
Frame = -1
Query: 399 FLKAINRPHYFYTSMYNSL-TADRDDFDGATSKGRGGSQEAKQSLAEYASLY-----REY 238
+ K INR H+F S SL R+ F + E K E A Y
Sbjct: 672 YFKEINRAHHFVPSTPPSLFNNKRESFHHHSFIPNSLEAERKSRSVERAHHYLPDSPANV 731
Query: 237 EHIEKCIKEGPYQPHLEQRKEELSKELASREEHIRKVVKEFKASGDSEQ 91
+ K I+E Y P LE+R + L ++ E H +V+ K + D +Q
Sbjct: 732 KDQRKIIREHHYVP-LEKRSQSLDLKVVHPEHHYVPLVR--KTTEDHQQ 777
>AC006617-11|AAF39766.2| 356|Caenorhabditis elegans Serpentine
receptor, class z protein56 protein.
Length = 356
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 267 AEYASLYREYEHIEKCIKEGPYQPHLEQRKEELSKE 160
A +A++ Y H CI + P HL+ RK +L +E
Sbjct: 319 AVHATVCNSYFHYVICISDWPSGKHLKSRKPDLKRE 354
>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
protein 1 protein.
Length = 1963
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = -1
Query: 321 DGATSKGRGGSQEAKQSLAEYASLYREYEHIEKCI-KEGPYQPHLEQRKEELSKELASRE 145
+G T++ + AK + L + +E+ + +E Y+ LEQ K +L EL +
Sbjct: 1008 EGLTTQLLDHEERAKHGVKAKGRLENQLHELEQDLNRERQYKSELEQHKRKLLAELEDSK 1067
Query: 144 EHI 136
+H+
Sbjct: 1068 DHL 1070
>AF106592-4|AAK21366.1| 786|Caenorhabditis elegans Hypothetical
protein D1037.1 protein.
Length = 786
Score = 29.5 bits (63), Expect = 3.1
Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Frame = -2
Query: 296 EEVRKQNRV*PNMLAYIESMSISRNASKKVRTSRTLSNGR-RNYLK--SWLLEKNTFERS 126
++VR++++ + + S S SR S++ R SR R R+ LK +EK E++
Sbjct: 61 KKVRRRSKTWSSSRSRSRSRSRSRGRSQERRRSRKSRKSRSRSRLKHREEKIEKKNLEKA 120
Query: 125 SRSSKRPGTLSSRSGRPRPLQK 60
++ P S+ +G+P+ ++
Sbjct: 121 PKNELIPQAPSTENGKPKEFKE 142
>Z93395-2|CAB07705.1| 905|Caenorhabditis elegans Hypothetical
protein ZC101.1 protein.
Length = 905
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Frame = -1
Query: 288 QEAKQSLAEYASLYREYEHIEKCIKEGPYQPHLEQRKEELSKELASREEHIRKVVKEFKA 109
Q+ +Q ++ + + P Q H E+ + L + EEH R+ +E +A
Sbjct: 676 QDRQQQAQQHHQAQQHHSQQHPAQPAQPSQDHHEEHRRRLEEHRRREEEHHRRQEEESRA 735
Query: 108 SGDSEQPLRAS-ASTTEXRVQ 49
+ L AS +TE Q
Sbjct: 736 RALQQSLLHASQVESTEVTFQ 756
>Z83112-5|CAB05541.1| 905|Caenorhabditis elegans Hypothetical
protein ZC101.1 protein.
Length = 905
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Frame = -1
Query: 288 QEAKQSLAEYASLYREYEHIEKCIKEGPYQPHLEQRKEELSKELASREEHIRKVVKEFKA 109
Q+ +Q ++ + + P Q H E+ + L + EEH R+ +E +A
Sbjct: 676 QDRQQQAQQHHQAQQHHSQQHPAQPAQPSQDHHEEHRRRLEEHRRREEEHHRRQEEESRA 735
Query: 108 SGDSEQPLRAS-ASTTEXRVQ 49
+ L AS +TE Q
Sbjct: 736 RALQQSLLHASQVESTEVTFQ 756
>U00065-9|AAA50738.2| 1009|Caenorhabditis elegans Hypothetical
protein D1044.6 protein.
Length = 1009
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = -1
Query: 243 EYEHIEKCIKEGPYQPHLEQRKEELSKELASREEHIRKVVKEFK 112
E EH + KE +Q LE R+E L K REEH ++ +E +
Sbjct: 361 EREHNLRIEKER-HQKELEFRREALRKREQEREEHKKRAQEELR 403
>Z81073-9|CAB03030.2| 583|Caenorhabditis elegans Hypothetical
protein F30F8.2 protein.
Length = 583
Score = 28.7 bits (61), Expect = 5.4
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 531 VAQLHFLYRKWKRDPTPCD 587
V L ++ KW+ DP PCD
Sbjct: 529 VVTLEYVLSKWQEDPNPCD 547
>Z79752-7|CAC70084.1| 583|Caenorhabditis elegans Hypothetical
protein F30F8.2 protein.
Length = 583
Score = 28.7 bits (61), Expect = 5.4
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 531 VAQLHFLYRKWKRDPTPCD 587
V L ++ KW+ DP PCD
Sbjct: 529 VVTLEYVLSKWQEDPNPCD 547
>Z68108-14|CAA92133.3| 2066|Caenorhabditis elegans Hypothetical
protein T05A10.1a protein.
Length = 2066
Score = 28.3 bits (60), Expect = 7.2
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Frame = -2
Query: 320 MAPHLRGVEEVRKQNRV*PNMLAYIESMSISRNASKKVRTSRTLSNGRRN--YLKSWLLE 147
+A + ++ + QNR L YI+SM + + A S S G ++ L++
Sbjct: 381 LAQQAQQQQQGQSQNRTVSQALQYIQSMQLQQRADGTPNGSTRTSPGPKDSRMLQAASRS 440
Query: 146 KNTFERSSRSSKRPGTLSSRSGRPRPLQ 63
++ FE S S G+L+S RP+Q
Sbjct: 441 QSLFELSG-SKHFMGSLTSGQPLLRPIQ 467
>Z68106-9|CAE17838.1| 551|Caenorhabditis elegans Hypothetical
protein F41E7.9 protein.
Length = 551
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = -1
Query: 819 YPRREKYRSHRYELPTVASQMKQAGVRYYCENT---KRPNIPFIVSKS 685
Y + YR Y PT A+ +Q+ + Y +NT K ++P + KS
Sbjct: 239 YQTQNPYRQDSYSQPTQANMSRQSANQQYRQNTMNAKYGSLPNLAQKS 286
>Z49207-10|CAE17907.1| 551|Caenorhabditis elegans Hypothetical
protein F41E7.9 protein.
Length = 551
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = -1
Query: 819 YPRREKYRSHRYELPTVASQMKQAGVRYYCENT---KRPNIPFIVSKS 685
Y + YR Y PT A+ +Q+ + Y +NT K ++P + KS
Sbjct: 239 YQTQNPYRQDSYSQPTQANMSRQSANQQYRQNTMNAKYGSLPNLAQKS 286
>U10402-9|AAA19065.1| 892|Caenorhabditis elegans Gro-1 operon gene
protein 1 protein.
Length = 892
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -1
Query: 141 HIRKVVKEFKASGDSEQPLRASASTTEXRVQALNIQIKXSEILN*T 4
HIRK+ ++ GD+E P+R S E I + S++L+ T
Sbjct: 651 HIRKLERDLTGEGDTELPVRVLNSDQEPVAIGDCINLHNSDLLSCT 696
>AY389809-1|AAR28681.1| 909|Caenorhabditis elegans zinc finger
transcription factorSMA-9 protein.
Length = 909
Score = 28.3 bits (60), Expect = 7.2
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Frame = -2
Query: 320 MAPHLRGVEEVRKQNRV*PNMLAYIESMSISRNASKKVRTSRTLSNGRRN--YLKSWLLE 147
+A + ++ + QNR L YI+SM + + A S S G ++ L++
Sbjct: 381 LAQQAQQQQQGQSQNRTVSQALQYIQSMQLQQRADGTPNGSTRTSPGPKDSRMLQAASRS 440
Query: 146 KNTFERSSRSSKRPGTLSSRSGRPRPLQ 63
++ FE S S G+L+S RP+Q
Sbjct: 441 QSLFELSG-SKHFMGSLTSGQPLLRPIQ 467
>AY052769-1|AAL14108.1| 885|Caenorhabditis elegans GOP-1 protein.
Length = 885
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -1
Query: 141 HIRKVVKEFKASGDSEQPLRASASTTEXRVQALNIQIKXSEILN*T 4
HIRK+ ++ GD+E P+R S E I + S++L+ T
Sbjct: 644 HIRKLERDLTGEGDTELPVRVLNSDQEPVAIGDCINLHNSDLLSCT 689
>Z99281-12|CAB16521.1| 649|Caenorhabditis elegans Hypothetical
protein Y57G11C.20 protein.
Length = 649
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/87 (19%), Positives = 37/87 (42%)
Frame = -1
Query: 306 KGRGGSQEAKQSLAEYASLYREYEHIEKCIKEGPYQPHLEQRKEELSKELASREEHIRKV 127
K + ++ E+ +R+ E K +++ ++ +Q+KE L + R +HI +
Sbjct: 256 KNEDRERATQKERREHIERHRQAEARAKALEKEKHEQEEKQKKENLERAEKERHDHIERQ 315
Query: 126 VKEFKASGDSEQPLRASASTTEXRVQA 46
+ + EQ + E R +A
Sbjct: 316 RQAEARAKALEQEKQEEKQKNEDRERA 342
>AL132949-5|CAB61074.1| 144|Caenorhabditis elegans Hypothetical
protein Y53F4B.5 protein.
Length = 144
Score = 27.9 bits (59), Expect = 9.5
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Frame = -1
Query: 288 QEAKQSLAEYASLYREYEHIEKCIKEGPYQPHLEQRKEELSKELASREE--HIRKVVKEF 115
Q+ +QSLA EHI K +K+ P+ +R KE+ +E H K
Sbjct: 37 QQQQQSLASEMIARDRLEHIVKHVKKYPFNCPYCRRLFASQKEVDGHQENRHAELDWKSV 96
Query: 114 KASGDSEQPLRASASTTE 61
+ + EQ R S S E
Sbjct: 97 EPFAEEEQIYRRSRSIYE 114
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,752,349
Number of Sequences: 27780
Number of extensions: 440258
Number of successful extensions: 1556
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1555
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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