Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10h13
(876 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0222 + 13229330-13229501,13230175-13230275,13230381-132305... 32 0.52
06_03_1252 + 28753584-28753883,28754693-28754886,28755192-28755597 31 1.6
02_01_0177 + 1214226-1214294,1214707-1214794,1216095-1216308,121... 30 2.8
11_06_0529 + 24687027-24687064,24687150-24687610,24687709-246881... 29 6.5
09_04_0202 - 15544498-15545037,15546043-15546449,15546874-155469... 29 6.5
08_02_0246 + 14745367-14745372,14745452-14746106,14746299-147472... 29 6.5
06_01_1011 + 7879283-7879885,7880057-7880962,7881274-7882515 29 6.5
10_08_1022 + 22337332-22339398 28 8.5
03_04_0079 + 17102623-17102644,17102794-17102897,17104461-171046... 28 8.5
>06_02_0222 +
13229330-13229501,13230175-13230275,13230381-13230574,
13232600-13233068
Length = 311
Score = 32.3 bits (70), Expect = 0.52
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 271 PFQHARPFHTMTYVAKTEDSTSRRGRILTDWTR 173
PF RP + + + ED ++ GR+ TDWT+
Sbjct: 176 PFPTKRPMYAFSSIWAAEDWATQGGRVKTDWTK 208
>06_03_1252 + 28753584-28753883,28754693-28754886,28755192-28755597
Length = 299
Score = 30.7 bits (66), Expect = 1.6
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 271 PFQHARPFHTMTYVAKTEDSTSRRGRILTDWTR 173
PF +P H + E+ ++ GR+ TDW+R
Sbjct: 185 PFPTRQPVHVFASIWNAEEWATQGGRVKTDWSR 217
>02_01_0177 +
1214226-1214294,1214707-1214794,1216095-1216308,
1216413-1216738,1216860-1217013,1217377-1217438,
1218078-1218133,1219456-1221279,1221775-1222698,
1222855-1222866
Length = 1242
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = -3
Query: 394 PMIYILTLVQVAHSTWTP-TDLSSARILTDLIMKVQDPTWRNPFQHARPFHTMTYVAKTE 218
P++Y+L + + +WTP L A + D + + T R+P RP+ + +T
Sbjct: 266 PLLYVLLIKKFGIKSWTPWRHLQKAEKVLDPVPLIGFLTARSPLMAIRPY-GFVFRRETG 324
Query: 217 DSTS 206
DS S
Sbjct: 325 DSDS 328
>11_06_0529 +
24687027-24687064,24687150-24687610,24687709-24688124,
24688688-24688860,24689733-24689868,24689914-24690264,
24691170-24691344,24691761-24691822
Length = 603
Score = 28.7 bits (61), Expect = 6.5
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 672 ALIEALLVTFFKGFNFVLCEFVVAQWV 752
AL+ + +V G NF +C+F +A+W+
Sbjct: 320 ALLNSQIVVLVFGLNFQICDFGLAKWL 346
>09_04_0202 -
15544498-15545037,15546043-15546449,15546874-15546977,
15547580-15547788,15548092-15549428,15551680-15551941
Length = 952
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 233 VGHRMKRTGVLEWVPPGWVLDLHYQVGKYPR 325
V +TGV++ P G +LDL VGK R
Sbjct: 19 VAQNANKTGVVDGFPVGVILDLQTMVGKIAR 49
>08_02_0246 +
14745367-14745372,14745452-14746106,14746299-14747269,
14748123-14749168,14750669-14751473
Length = 1160
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = -2
Query: 278 EEPIPARPSV--SYDDLRRQNRGQYVKERQDPYRLDPNA 168
+EP+PARPS D++ R +RG + E Q RL PN+
Sbjct: 118 DEPLPARPSFFSIVDEVFRCDRGSPITESQ---RLPPNS 153
>06_01_1011 + 7879283-7879885,7880057-7880962,7881274-7882515
Length = 916
Score = 28.7 bits (61), Expect = 6.5
Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Frame = -2
Query: 494 PGSYIGQILRDRKNGKIGGTSMPV-QTPSMYGATTNDIYSDAGPGSSLDLDTNRPVFSED 318
P + Q L + G + G+ Q S YG DI+ G LDL++ F +
Sbjct: 6 PHDFFSQSLNEAPTGHMDGSDYGFSQGSSGYGGYGTDIHFGGGGSGGLDLNSQADAFPDF 65
Query: 317 TYRPDNEGPGPNLEEPIPA 261
PG + PI A
Sbjct: 66 ASYQQILEPGSLVLPPIRA 84
>10_08_1022 + 22337332-22339398
Length = 688
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -2
Query: 299 EGPGPNLEEPIPARPSVSYDDLRRQNRGQYVKERQDPYRLDPN 171
E P P++ P P++P+ R+Q + Q + +Q P+R + N
Sbjct: 306 ENPSPSVHAPTPSQPAA--PPQRQQQQQQSSQAQQGPFRRELN 346
>03_04_0079 +
17102623-17102644,17102794-17102897,17104461-17104660,
17104864-17105005,17105024-17105290
Length = 244
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 296 GPGPNLEEPIPARPSVSYDDLRRQNRGQY 210
GPGPN + PS+ ++ L +Q RG Y
Sbjct: 12 GPGPNTLIGLITEPSIYWNALYKQRRGGY 40
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,120,759
Number of Sequences: 37544
Number of extensions: 564231
Number of successful extensions: 1742
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1742
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -