Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10h12
         (838 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    25   1.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   6.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   8.1  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 116 VSENGITQEASYCPLPLGVIIL*STSRLKTTTQEH 12
           V +NGI+ E S CP  + V  L ++  LK     H
Sbjct: 138 VLDNGISGETSVCPSQIVVFDLKNSKLLKQVKIPH 172


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +1

Query: 391 SITEVIWQTAHSSGYFDEFFYC 456
           S+   +W     S +F +FF+C
Sbjct: 408 SVNAGMWMWLSCSSFFQQFFHC 429


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 624 FHPSVFQDHLSSHW 665
           FH S F + L +HW
Sbjct: 786 FHESGFMESLDNHW 799


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 183 GDHKLLTPPDVSPLTQQK*FSE 248
           GD  ++ PP + P T Q+  SE
Sbjct: 603 GDVAVIVPPIIEPFTFQEGLSE 624


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 183 GDHKLLTPPDVSPLTQQK 236
           GD  ++ PP +SP T  +
Sbjct: 603 GDVAVIVPPKISPFTADR 620


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,900
Number of Sequences: 438
Number of extensions: 4963
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)