Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10h10
         (476 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-2919|AAF57539.1|  408|Drosophila melanogaster CG15121-P...    30   1.9  
BT010289-1|AAQ23607.1|  822|Drosophila melanogaster LD23309p pro...    27   9.9  
AE013599-189|AAF57367.2|  822|Drosophila melanogaster CG3273-PA ...    27   9.9  

>AE013599-2919|AAF57539.1|  408|Drosophila melanogaster CG15121-PA
           protein.
          Length = 408

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 265 HARLFGHNCFIIPGFCARH-KFVFNFYSVYSFGIFIQN 375
           HA +F    F++P FC  + + V +F  VY + +F+ +
Sbjct: 22  HAFIFNETQFVVPKFCGPYMEIVKHFAEVYHYQLFLDS 59


>BT010289-1|AAQ23607.1|  822|Drosophila melanogaster LD23309p
           protein.
          Length = 822

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 349 YSFGIFIQNNKRDCSTVFFFETFD*ERYVLVWL 447
           +S+G+F   N+RDC   F  ET    R  + W+
Sbjct: 89  HSYGLFWTQNRRDCFIYFALETETSCRRHMKWM 121


>AE013599-189|AAF57367.2|  822|Drosophila melanogaster CG3273-PA
           protein.
          Length = 822

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 349 YSFGIFIQNNKRDCSTVFFFETFD*ERYVLVWL 447
           +S+G+F   N+RDC   F  ET    R  + W+
Sbjct: 89  HSYGLFWTQNRRDCFIYFALETETSCRRHMKWM 121


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,210,705
Number of Sequences: 53049
Number of extensions: 417456
Number of successful extensions: 943
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1643002263
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)