Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10h09
         (793 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    25   1.1  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    25   1.1  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    25   1.1  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    25   1.1  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   5.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   5.7  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   9.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.9  

>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 132 KIIVNVLNNVVYQESXIRNL*NFKMNVLNE-PVYIEFYLY 16
           KII ++LNN ++  +  + L  + +N + + PV +   +Y
Sbjct: 302 KIISSLLNNTIHNNNNYKKLQYYNINYIEQIPVPVPIPIY 341


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 132 KIIVNVLNNVVYQESXIRNL*NFKMNVLNE-PVYIEFYLY 16
           KII ++LNN ++  +  + L  + +N + + PV +   +Y
Sbjct: 313 KIISSLLNNTIHNNNNYKKLQYYNINYIEQIPVPVPIPIY 352


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 132 KIIVNVLNNVVYQESXIRNL*NFKMNVLNE-PVYIEFYLY 16
           KII ++LNN ++  +  + L  + +N + + PV +   +Y
Sbjct: 313 KIISSLLNNTIHNNNNYKKLQYYNINYIEQIPVPVPIPIY 352


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 132 KIIVNVLNNVVYQESXIRNL*NFKMNVLNE-PVYIEFYLY 16
           KII ++LNN ++  +  + L  + +N + + PV +   +Y
Sbjct: 302 KIISSLLNNTIHNNNNYKKLQYYNINYIEQIPVPVPIPIY 341


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 421 IRFVMCQTCLKGICFLPIFSFLEHCH 344
           I F M  TC+  + F+PI+    + H
Sbjct: 708 IGFTMYTTCIIWLAFVPIYFGTGNAH 733


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 421 IRFVMCQTCLKGICFLPIFSFLEHCH 344
           I F M  TC+  + F+PI+    + H
Sbjct: 798 IGFTMYTTCIIWLAFVPIYFGTGNAH 823


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 84  YXILDKRHYSVHSRLF 131
           Y IL +RHYS++S  +
Sbjct: 235 YNILLRRHYSMNSTTY 250


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 169  SRTREGKKQNEIENIKCHRD 228
            S   + K+ NEI   +C RD
Sbjct: 1872 SSFNDSKESNEISEAECDRD 1891


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,662
Number of Sequences: 438
Number of extensions: 2859
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)