Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10h07
         (809 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos...    33   0.036
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M...    31   0.15 
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos...    30   0.34 
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S...    28   1.8  
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac...    27   3.2  
SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   4.2  
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos...    27   4.2  
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    26   5.5  
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc...    26   7.3  
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    26   7.3  
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    25   9.6  

>SPBC215.03c |csn1||COP9/signalosome complex subunit
           Csn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 33.5 bits (73), Expect = 0.036
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 250 DMVSKIYAFCGLKFSCLKGFDSGVTLIFPVASDTSERI 363
           ++ S IYA+CGL   CL  ++  +     V +DTS+ I
Sbjct: 184 ELTSPIYAYCGLANFCLGDYEEALAHFLKVETDTSDGI 221


>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 556

 Score = 31.5 bits (68), Expect = 0.15
 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 2/102 (1%)
 Frame = -1

Query: 638 DVFVLDLDNDIYVFVGEKAKNVEKLKAIS--FANQVRDQDHHGRGRVDIVDKYSSDVDVQ 465
           D   L+L+N ++  +   +  ++K         N+  +       + D ++K   D ++ 
Sbjct: 4   DTEELELENAVFGNINNFSSFLDKENETFDVMMNEAPELSEDNDAQEDELEKLE-DAELF 62

Query: 464 KFFTALGSGVKDLVPDESTGGDDQEFERNEASNVILSEVSDA 339
            F T    G KD VP +   GD+   E  EASN I S   D+
Sbjct: 63  MFDTGSADGAKDSVPLDIIAGDNTVKEDEEASNEIPSIWEDS 104


>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 30.3 bits (65), Expect = 0.34
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
 Frame = -1

Query: 281 PQNAYILDTISGNIYVWIGKQATANEKSQAMTKAQELLNAKNYPSWVQVTR--VLQNTEP 108
           P  A I+D        W GK  +  +K  A +      + K +  W Q+TR  VLQ  + 
Sbjct: 288 PVFAKIVDLFLRFFLSWTGKNISETQKIVAYSHLYSFTSVKCFVHWAQITRRKVLQMYDD 347

Query: 107 A-AFKQYFFT 81
           +  FK  ++T
Sbjct: 348 SPGFKPSYYT 357


>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
           Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = -3

Query: 333 KDQSDATIEAFQARELESTERVYFGHHIWQHLRLDREAGYRKREISGHDESSGI 172
           K+ ++A+I  F A ELE  +  Y   HIWQ    + E   ++ E  G D   GI
Sbjct: 33  KESTEASINMFLA-ELERLQLEYGKEHIWQ----NEELNLQRVEYQGKDCILGI 81


>SPCC1827.02c |||cholinephosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 354

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -1

Query: 422 PDESTGGDDQEFERNEASNVILSEVSDATGKIKVTPLSKPFKQ 294
           P+E    D++E ++ E+ +  L E+S +   ++  P    FK+
Sbjct: 34  PEEQEKKDEKEDDKEESPSKSLEEISQSVSPVEEEPRDVRFKE 76


>SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -2

Query: 601 SLSARKLKTLRSLKRFRSPIKYGIRIITDAEESILWT 491
           SL  RKL T++ LK  R  +   IRI+T+A  +  WT
Sbjct: 43  SLEKRKL-TVQDLKDTRMELNNMIRILTEAMAAHEWT 78


>SPBC725.07 |pex5||peroxisomal targeting signal receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = -1

Query: 212 ANEKSQAMTKAQELLNAKNYPS-WVQVTRVLQNT--EPAAFKQYFFTWRDFGMSHS 54
           A++ S  + K ++   +K+    W +  + L+N   EPA+ ++Y   W DF  S++
Sbjct: 174 ASQISNKLEKEKDATGSKSIEELWEEHQKQLKNAGLEPASLEEYQKQWEDFLKSNN 229


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 3/133 (2%)
 Frame = -1

Query: 623 DLDNDIYVFVGEKAKNVEKLKAISFANQVRDQDHHGRGRVDIVDKYSSDVDVQKFFTALG 444
           DL+ND      E + + E++  IS  +   +++ +G  R++ ++    D +  +      
Sbjct: 134 DLENDFLYGADEFSSDEEEMDDISVTSSEEEEEENG-ARIEELNSDEEDAEQAEEEILEK 192

Query: 443 SGVKDLVPDESTGGDDQEFERNEASNVILSEVSDATG--KIKVTPLSKPFKQENLSPQ-N 273
              KD V  E    D  + E  E    +  +VSD+    K K  P  +  + E  S    
Sbjct: 193 PVPKDEVA-EKHSKDKLKKEEKEKKTAV--DVSDSVNGKKRKTEPAGEGEQTEKKSKSTK 249

Query: 272 AYILDTISGNIYV 234
            Y    + GN+ V
Sbjct: 250 TYPKQVLEGNVTV 262


>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = -1

Query: 689 DVRVRQVDPQIASMNKGDVFVLDLDNDIYVFVGEKAKNVEKLKAISFANQVRDQDHH 519
           D R+ QV+    ++ +G   +    N+  V +G + KNV KL+ +S   ++   D+H
Sbjct: 14  DGRLLQVEYGQEAVRRGTTAIALRGNECIV-IGVERKNVPKLQNVSNFQKIAMVDNH 69


>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = -1

Query: 614 NDIYVFVGEKAKNVEKLKAISFANQVRDQDHHGRGRVDIVDKYSSDVDVQKFFTALGSGV 435
           +D Y    EK K ++ L A+SF      +  +  G   I +    +++++ F      G+
Sbjct: 202 HDNYTRNIEKLKELDNLVAVSFERDDIVEPPYSTGFGWINETTGENIEMEDFVLYESLGL 261

Query: 434 KDLV 423
           KDLV
Sbjct: 262 KDLV 265


>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -1

Query: 419 DESTGGDDQEFERNEASNVILSEVSDATGKIKVTPLSKP 303
           D+S  GDD++     A + ++  + D   KI   PL  P
Sbjct: 562 DDSFSGDDKQVVDVVAPSFVIPRLDDILNKIADKPLYSP 600


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,213,270
Number of Sequences: 5004
Number of extensions: 64360
Number of successful extensions: 222
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)