Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10h05
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomy...    28   1.3  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    28   1.7  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    28   1.7  
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   2.2  
SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|c...    27   3.9  
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch...    26   5.1  
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    26   5.1  
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1...    26   5.1  
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    26   6.7  
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    26   6.7  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    26   6.7  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   6.7  
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp...    26   6.7  
SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces pom...    26   6.7  
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch...    26   6.7  
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch...    25   8.9  
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    25   8.9  

>SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 336

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 319 IHVLGAILAGRQERGPVYCSPLQLLTRFFVLSLASPRGSLRRRN 450
           +HV+   L+  + R P+  SP   L R F  S      S +RRN
Sbjct: 232 LHVISDTLSSPRRRNPLLSSPKTPLRRSFSKSKVRNSNSTKRRN 275


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 16/62 (25%), Positives = 26/62 (41%)
 Frame = -3

Query: 672 YVPKPSVLRESFKPAHKYHCVEQPFENRTVNRMSFLDPGRVPLPESYAPVKCYEKPTAKM 493
           Y P   V   +F P    H  +  +  + VNR +FL     P P +  P + +    ++ 
Sbjct: 142 YYPNMYVSANTFIPMPYAHYTDNMYHAKPVNRPNFLPREGTPPPFAQQPAEQFSPFNSEY 201

Query: 492 ES 487
           ES
Sbjct: 202 ES 203


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
 Frame = -3

Query: 726 HDMWGQGPMQNITTQRHDYVPKPSV----LRESFKPAHKY 619
           HD+W       +  ++ DY P P +      ES+ P  +Y
Sbjct: 263 HDLWADDDQATVNQRKLDYAPAPKLPPPSHEESYNPPEEY 302


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = -3

Query: 582 NRMSFLDPGRVPLPESYAPVKCYEKPTAKMESDTIHKMSFQPVCVPTPQRPP 427
           ++M+    G  PLP S  P      P +   S   H M+F P  VPT   PP
Sbjct: 290 HKMNVPPMGMYPLPFSPLPSAAPPIPFSPNVSSHPH-MAFLPATVPTHSAPP 340


>SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 50

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
 Frame = -3

Query: 330 EYMDPCAYGDCKPCDCTCPSGCIK-TDPCACDYPKAGCCS*AS 205
           E+   C     KPCDC    GC    + C C       C  +S
Sbjct: 2   EHTTQCKSKQGKPCDCQSKCGCQDCKESCGCKSSAVDNCKCSS 44


>SPBC9B6.11c |||CCR4/nocturin family
           endoribonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 502

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 173 NTVLPMFKKMADAHEQQPAFG*SQAQGSVLIHPE 274
           N  +P ++     HEQ P      + G  L+HPE
Sbjct: 386 NDYVPHYRSFYQQHEQNPVLFSLYSVGYKLVHPE 419


>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -3

Query: 606 QPFENRTVNRMSFLDPGRVPLPESYAPVKCYEKPTAKMESD 484
           Q    +   R++F D G  P   S A  + YEK  + +  D
Sbjct: 398 QVLRRQVEERLNFFDTGVAPTRNSIAMAEAYEKALSSVNID 438


>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 386

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = -1

Query: 395 VKSWRGLQYTGPRSCLPARIAPSTWIPALMAIANL-VTALALQDVLKRIPVPAITRKRVV 219
           +KSW  L+  G   CL +    +  + A   + N+ +  L LQ     I + A+   + V
Sbjct: 240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQ--YNEIELDAVRTLKTV 297

Query: 218 VRERQP 201
           + E+ P
Sbjct: 298 IDEKMP 303


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = -3

Query: 573 SFLDPGRVPLPESYAPVKCYEKPTAKMESDTIHKMSFQPVCVP 445
           S+  P   P P S  P++   +PT    S++     + P  VP
Sbjct: 3   SYALPSMQPTPTSSIPLRQMSQPTTSAPSNSASSTPYSPQQVP 45


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 16/52 (30%), Positives = 21/52 (40%)
 Frame = +3

Query: 213 TNNNPLSGNRRHRDPF*YILKGKCSHKVCNRHKRRDPCTRCNPRREARTRTG 368
           T +N   G+ R  +P+   L     H   N H +RD   R   RRE     G
Sbjct: 143 TRSNHRHGSHRRHEPYRTHLSRHHRHSTTNYHSKRD--DRYERRREHSPNDG 192


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/40 (25%), Positives = 16/40 (40%)
 Frame = -1

Query: 569  FWTRDECPYRNRMLPSSVTKSQQPKWRATRYIRCPSSLYV 450
            FW+++EC Y    +  S   S    W     + C    Y+
Sbjct: 947  FWSKNECKYVKSNITFSANDSANYNWNYVDQLICGFETYL 986


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 23/92 (25%), Positives = 35/92 (38%)
 Frame = -3

Query: 612 VEQPFENRTVNRMSFLDPGRVPLPESYAPVKCYEKPTAKMESDTIHKMSFQPVCVPTPQR 433
           +  P  N     + F +P  V  P          +PT +  S+    +    +  P   +
Sbjct: 367 LNDPKPNLPETEVDFGEPLEVEAPSFVVQNNSAVQPTTQKTSEDSTDLHTNEI--PNVAQ 424

Query: 432 PPWACKGQYEKPCQKLEGTTIYRSSFLPPGED 337
           PP + + +  K   KLE   I  SS L P ED
Sbjct: 425 PPSSFEKENNKDTSKLENPDI-SSSPLSPTED 455


>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
           Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
 Frame = -3

Query: 663 KPSVLRESFK---PAHKYHCVEQPFENR 589
           KPS+L  S     PAH  +CV   FE R
Sbjct: 342 KPSILHSSLSSLLPAHPIYCVPFGFEER 369


>SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -1

Query: 518 VTKSQQPKWRATRYIRCPSSLYVFRRLNDPRGLARDNTKNRVKSWRGL 375
           + K  + KW A       +S+ V+ + +     A  NTKN+ K W  L
Sbjct: 260 IKKVSEIKWEALVKSPANNSVNVYAK-DSNHSSASGNTKNKAKDWDSL 306


>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
           Nak1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -3

Query: 633 PAHKYHCVEQPFE-NRTVNRMSFLDPGRVPLPESYAPVKCYEKPTAKMESDT 481
           PAHK+  V QP E NR+++         +P P+S +P     KP+ +  S T
Sbjct: 515 PAHKHSAVLQPLEVNRSIS---------IPPPKSISP-SILHKPSLESASST 556


>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 563

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 4/26 (15%)
 Frame = +3

Query: 294 VCNRHK----RRDPCTRCNPRREART 359
           +C R K    R+ PC+RC  R E  T
Sbjct: 21  ICRRRKVKCDRQQPCSRCKERNEVCT 46


>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -3

Query: 603 PFENRTVNRMSFLDPGRVPLPESYAPVKCYEKPTAKMESDT 481
           P   R  +  S L+P    LP S APV  Y + ++ + S++
Sbjct: 255 PANTRASHSPSLLEPYAHSLPSSVAPVGAYPEKSSYLLSNS 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,517,698
Number of Sequences: 5004
Number of extensions: 82491
Number of successful extensions: 264
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)