Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10h05
(761 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 33 0.19
04_03_0625 + 18126856-18127444,18127561-18127725,18127827-18127834 33 0.19
12_01_0288 - 2160981-2161076,2161150-2161236,2161333-2161419,216... 32 0.57
05_06_0232 + 26596478-26596480,26596492-26596574,26596813-265969... 30 2.3
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 29 3.1
11_03_0128 - 10437407-10438049,10438097-10438272 29 5.3
04_03_0286 + 13915705-13915984,13916478-13917062,13918188-139186... 29 5.3
09_03_0040 + 11816056-11819069,11819837-11820428 28 7.1
03_02_0822 + 11530250-11530442,11530728-11531129,11531430-115318... 28 7.1
04_04_0680 - 27217563-27220088 28 9.3
03_06_0412 + 33749039-33749077,33749585-33749728,33750110-337508... 28 9.3
01_06_0990 - 33623085-33623615,33624138-33624278 28 9.3
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 33.5 bits (73), Expect = 0.19
Identities = 23/72 (31%), Positives = 26/72 (36%)
Frame = -3
Query: 447 PTPQRPPWACKGQYEKPCQKLEGTTIYRSSFLPPGEDCTEYMDPCAYGDCKPCDCTCPSG 268
P PQ PP CK PC+K + E PC KPC C P
Sbjct: 81 PLPQPPP-PCK---PPPCEKPPEDCKPKPCHCCSCEKPKPKPKPCHCEKPKPCHCEKPKP 136
Query: 267 CIKTDPCACDYP 232
C K PC + P
Sbjct: 137 CEKPPPCKPEEP 148
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Frame = -3
Query: 303 DCKP--CDC-TCPSGCIKTDPCACDYPKAGCC 217
DCKP C C +C K PC C+ PK C
Sbjct: 100 DCKPKPCHCCSCEKPKPKPKPCHCEKPKPCHC 131
>04_03_0625 + 18126856-18127444,18127561-18127725,18127827-18127834
Length = 253
Score = 33.5 bits (73), Expect = 0.19
Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 6/112 (5%)
Frame = -3
Query: 585 VNRMSFLDP--GRVPLPESYAPVKCYEKPTAKMESDTIHKMSFQPVCVPTPQRPPWACKG 412
+N F+D GRVP+ +A A+ + D+ +S VCV + P + C
Sbjct: 122 MNSSQFIDTNGGRVPMVVDWAVQNASNCVEAQKDHDSYACISSNSVCVNSSSGPGYICN- 180
Query: 411 QYEKPCQKLEGTTIYRSSFLPPGEDCTEYMDPCAYGDCK----PCDCTCPSG 268
C Y ++C E+ + YG CK +C+CP+G
Sbjct: 181 -----CTHGYQGNPYLLHGCQDIDECEEHENYHCYGTCKNILGSFECSCPAG 227
>12_01_0288 -
2160981-2161076,2161150-2161236,2161333-2161419,
2161641-2161726,2161805-2161908,2162618-2162704,
2162790-2162913,2163058-2163176,2163268-2163397,
2163583-2163671,2163804-2163892,2164579-2164672,
2164778-2164857,2164952-2165041,2166307-2166393,
2166495-2166539,2166966-2167042,2167120-2167225,
2167383-2167464,2167553-2167624,2168106-2168183,
2168259-2168349,2168826-2168979
Length = 717
Score = 31.9 bits (69), Expect = 0.57
Identities = 18/65 (27%), Positives = 26/65 (40%)
Frame = -1
Query: 512 KSQQPKWRATRYIRCPSSLYVFRRLNDPRGLARDNTKNRVKSWRGLQYTGPRSCLPARIA 333
K Q KW R + P L N G DN V+++R +Y G R C+ +
Sbjct: 72 KLQTGKWNVYRSAKSPLKLINRFPDNPDIGTLHDNFVYAVETFRDCRYLGTRVCVDGTVG 131
Query: 332 PSTWI 318
W+
Sbjct: 132 DYKWM 136
>05_06_0232 +
26596478-26596480,26596492-26596574,26596813-26596934,
26597447-26597611,26597816-26597909,26598001-26598208
Length = 224
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 4 NLPNLEIIIIRKYN*NYVGRIHNLKLLFLQFVK 102
N+PN E+ II + N Y G LK L F+K
Sbjct: 179 NIPNHELHIIAEANHRYTGHEKELKAFVLDFIK 211
>01_03_0117 +
12684729-12685886,12685978-12686145,12686292-12686336,
12686438-12687280
Length = 737
Score = 29.5 bits (63), Expect = 3.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 748 AVDPALPPRHVGSGSHAEHHHA 683
A+ PA PP+ + +H+ HHHA
Sbjct: 169 AISPATPPQLSPANAHSTHHHA 190
>11_03_0128 - 10437407-10438049,10438097-10438272
Length = 272
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = -1
Query: 749 RSRSGPATTTCGVRVPCRTSPRNDTTTCP--SRLYSGSRSNRLTSTT 615
RSRS +T++ R CR +P N T+ C SR S + + R++ T+
Sbjct: 131 RSRSTASTSSTTCRTCCRATP-NSTSPCKTGSRCSSSTTARRISITS 176
>04_03_0286 +
13915705-13915984,13916478-13917062,13918188-13918661,
13918963-13920208,13920282-13920297
Length = 866
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -3
Query: 339 DCTEYMDPCAYGDCKPCDCTCPSGCIKTDPCACDYPKAGCCS 214
D + +D K C+ TCP+ I D D GCCS
Sbjct: 139 DIYQVLDQSGNVPAKLCNVTCPNRGITEDIARQDCNGTGCCS 180
>09_03_0040 + 11816056-11819069,11819837-11820428
Length = 1201
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -3
Query: 333 TEYMDPCAYGD--CKPCDCTCPSGCIKTDPCACDYPKAG 223
TE + P +Y K CDCT +GC ++ CAC G
Sbjct: 944 TEVIYPHSYAKEPLKGCDCT--NGCSDSNRCACAVKNGG 980
>03_02_0822 +
11530250-11530442,11530728-11531129,11531430-11531878,
11533568-11533744
Length = 406
Score = 28.3 bits (60), Expect = 7.1
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3
Query: 297 KPCDCTCPSGCIKTDPCAC 241
K C C C S C+ D C+C
Sbjct: 235 KMCVCKCTSSCLGEDNCSC 253
>04_04_0680 - 27217563-27220088
Length = 841
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/32 (34%), Positives = 12/32 (37%)
Frame = -3
Query: 318 PCAYGDCKPCDCTCPSGCIKTDPCACDYPKAG 223
P Y P C C GC + CAC G
Sbjct: 598 PRNYQPAPPAGCGCVGGCSDSKRCACAVKNGG 629
>03_06_0412 +
33749039-33749077,33749585-33749728,33750110-33750862,
33750959-33751778,33751893-33752140,33752285-33752391,
33753098-33753248,33753339-33753530,33753905-33754042
Length = 863
Score = 27.9 bits (59), Expect = 9.3
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +2
Query: 506 GFS*HLTGAYDSGRGTRPGSKNDIRFTVRFSNGCSTQWYL*AGLNDSRSTDGLGT*SCRC 685
GFS HL+G + GT P + N + F++ S+ +++ S +GL + +C+
Sbjct: 40 GFSLHLSGDEGTPTGTTPSNGNVVPFSLHLSSESTSKL-------SSTQANGLNSVTCKD 92
Query: 686 VV-MFCM 703
V+ FC+
Sbjct: 93 VLGGFCI 99
>01_06_0990 - 33623085-33623615,33624138-33624278
Length = 223
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -3
Query: 510 KPTAKMESDTIHKMSFQPVCVPTPQRPPWACKGQYEKPCQKLEGTTIYRS 361
+P + E H ++ C T WA G++E P EGT RS
Sbjct: 94 QPRKRKEDHLDHLCAYMGNCAVTQHAVSWADDGEWELPESGEEGTAPPRS 143
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,661,859
Number of Sequences: 37544
Number of extensions: 587415
Number of successful extensions: 1817
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1810
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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