Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10h05
         (761 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024838-4|AAF60819.1|   99|Caenorhabditis elegans Hypothetical ...    35   0.055
AL021503-6|CAA16424.2|  459|Caenorhabditis elegans Hypothetical ...    33   0.17 
U50311-12|AAA92315.1|  169|Caenorhabditis elegans Hypothetical p...    32   0.51 
AL132895-2|CAC14404.1|  613|Caenorhabditis elegans Hypothetical ...    32   0.51 
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical...    31   1.2  
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ...    31   1.2  
U10438-1|AAA19083.3|  524|Caenorhabditis elegans Hypothetical pr...    29   2.7  
DQ340624-1|ABC65812.1|  524|Caenorhabditis elegans chondroitin p...    29   2.7  
AC006772-3|AAF60608.1|   85|Caenorhabditis elegans Hypothetical ...    29   2.7  
U28971-1|AAA68376.2|  551|Caenorhabditis elegans Egg sterile (un...    29   3.6  
AL161712-8|CAC70133.1|  340|Caenorhabditis elegans Hypothetical ...    29   3.6  
Z83127-1|CAB05630.1|  160|Caenorhabditis elegans Hypothetical pr...    29   4.8  
U46675-3|AAB52643.1|  375|Caenorhabditis elegans Activated in bl...    29   4.8  
U00065-7|AAL02474.1| 1090|Caenorhabditis elegans Hypothetical pr...    29   4.8  
U00065-6|AAL02472.1| 1051|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z93393-15|CAE54926.1|  347|Caenorhabditis elegans Hypothetical p...    28   8.3  
Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical pr...    28   8.3  
Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>AC024838-4|AAF60819.1|   99|Caenorhabditis elegans Hypothetical
           protein Y59E9AL.5 protein.
          Length = 99

 Score = 35.1 bits (77), Expect = 0.055
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -3

Query: 315 CAYGDCKPCDCTCPSGCIKTDPCACDYPKAGCCS 214
           C   DC  C CT  S C +  PC      +GCCS
Sbjct: 68  CVQDDCTTCSCTSASRCSRCSPCC-----SGCCS 96


>AL021503-6|CAA16424.2|  459|Caenorhabditis elegans Hypothetical
           protein Y68A4A.10a protein.
          Length = 459

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 26/92 (28%), Positives = 34/92 (36%), Gaps = 1/92 (1%)
 Frame = -3

Query: 537 SYAPVKCYEKPTAKMESDTIHKMSFQPVCVPTPQRPPWACKGQYEKPCQKLEGTTIYRSS 358
           S AP  C    T    +D    MS +  C  TP   P  C     K C    G      +
Sbjct: 184 SIAPQSCLPCQTCASFTDP---MSEKATCTATPGMTPGDCATLAVK-CMINAGFECNDVA 239

Query: 357 FLPPGEDCTEYMDPCA-YGDCKPCDCTCPSGC 265
            +PP + CT + DP +  G C        +GC
Sbjct: 240 LIPPCQTCTPFTDPMSDKGTCTATTGMTSTGC 271


>U50311-12|AAA92315.1|  169|Caenorhabditis elegans Hypothetical
           protein C25E10.10 protein.
          Length = 169

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -3

Query: 558 GRVPLPESYAPVKCYEKPTAKMESDTIHKMSFQPVCVPTPQRPPWACKGQYE-KPC 394
           G +  P++Y   +C E P + +E  +    S  P CVP P R P  C+G  E K C
Sbjct: 36  GSIKCPDNY---RC-ELPVSDLECGSEDDCSVDPKCVPIPIRKP-ECEGDEELKAC 86


>AL132895-2|CAC14404.1|  613|Caenorhabditis elegans Hypothetical
           protein Y59A8A.2 protein.
          Length = 613

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = -3

Query: 396 CQKLEGTTIYRSSF--LPPG-EDCTEYMDPCAYGDCKPCDCT-CPS 271
           CQK  G  ++ S +  LP G +D + Y +PC YG   P  C  CPS
Sbjct: 126 CQKC-GINVHESCYGTLPGGSDDASWYCEPCLYGLTLPPHCEFCPS 170


>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
           protein Y64G10A.7 protein.
          Length = 1651

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/69 (26%), Positives = 28/69 (40%)
 Frame = -3

Query: 435 RPPWACKGQYEKPCQKLEGTTIYRSSFLPPGEDCTEYMDPCAYGDCKPCDCTCPSGCIKT 256
           R P  C  +  + C ++ G    +  +   G  C     P  +G      C+CP+G I+ 
Sbjct: 718 RFPCKCARENSEGCDEITGKCRCKPGYY--GHHCKRMCSPGLFGAGCAMKCSCPAG-IRC 774

Query: 255 DPCACDYPK 229
           DP   D  K
Sbjct: 775 DPVTGDCTK 783


>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
           protein Y64G10A.7 protein.
          Length = 1651

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/69 (26%), Positives = 28/69 (40%)
 Frame = -3

Query: 435 RPPWACKGQYEKPCQKLEGTTIYRSSFLPPGEDCTEYMDPCAYGDCKPCDCTCPSGCIKT 256
           R P  C  +  + C ++ G    +  +   G  C     P  +G      C+CP+G I+ 
Sbjct: 718 RFPCKCARENSEGCDEITGKCRCKPGYY--GHHCKRMCSPGLFGAGCAMKCSCPAG-IRC 774

Query: 255 DPCACDYPK 229
           DP   D  K
Sbjct: 775 DPVTGDCTK 783


>U10438-1|AAA19083.3|  524|Caenorhabditis elegans Hypothetical
           protein B0280.5 protein.
          Length = 524

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -3

Query: 342 EDCTEYMDPC-AYGDCKPCDCTCPSGCIKTDPCACD 238
           +DCT  +D   A G+C+P   TC  G  +   C  D
Sbjct: 22  QDCTNALDGLYALGECEPQFLTCSGGIARIMDCPAD 57


>DQ340624-1|ABC65812.1|  524|Caenorhabditis elegans chondroitin
           proteoglycan-2 protein.
          Length = 524

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -3

Query: 342 EDCTEYMDPC-AYGDCKPCDCTCPSGCIKTDPCACD 238
           +DCT  +D   A G+C+P   TC  G  +   C  D
Sbjct: 22  QDCTNALDGLYALGECEPQFLTCSGGIARIMDCPAD 57


>AC006772-3|AAF60608.1|   85|Caenorhabditis elegans Hypothetical
           protein Y46D2A.3 protein.
          Length = 85

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
 Frame = -3

Query: 309 YGDCKPCDCTCPSGCIKTDPCA---CDYPKAGCC 217
           Y  C P  C C     +  PCA   C +P+  CC
Sbjct: 35  YRICYPIRCKCSGPTKRKAPCANRPCPFPRTTCC 68


>U28971-1|AAA68376.2|  551|Caenorhabditis elegans Egg sterile
           (unfertilizable) protein1 protein.
          Length = 551

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
 Frame = -3

Query: 420 CKGQYEKPCQKLEGTTIYRSSFLPPGEDCTEYMDPCAYGDCKPCDCTCPSGCIKTDPCAC 241
           C G  +  C   +GT I R+      +DCT+ MD     DC P  CT  S   K     C
Sbjct: 292 CSGTDKALCD--DGTCIMRTQVCDGKKDCTDGMDE---EDC-PGSCTIESFSPKLKMVTC 345

Query: 240 ----DYPKAGCCS 214
                Y +A  CS
Sbjct: 346 SDGKQYTEAEACS 358


>AL161712-8|CAC70133.1|  340|Caenorhabditis elegans Hypothetical
           protein Y66D12A.11 protein.
          Length = 340

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -3

Query: 576 MSFLDPGRVPL-PESYAPVKCYEKPTAKMESDTIHKMSFQPVCVPTPQRPP 427
           MS L+P  V + PES+  ++  + P     S+   ++  QP  VP P+  P
Sbjct: 195 MSELEPEGVEVTPESFPDLQIMKPPPVSPPSNISEQIHHQPPLVPQPESRP 245


>Z83127-1|CAB05630.1|  160|Caenorhabditis elegans Hypothetical
           protein T23F6.1 protein.
          Length = 160

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = -3

Query: 300 CKPCDCTCPSGCIKTDPCACDYPKAGC 220
           CK C   C + C     C+C   + GC
Sbjct: 111 CKCCQPVCTNACTNGGGCSCGCTRGGC 137


>U46675-3|AAB52643.1|  375|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 10 protein.
          Length = 375

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 2/80 (2%)
 Frame = -3

Query: 453 CVPTPQRPPWACKGQYEKP-CQKLEGTTIYRSSFLPPGEDCTE-YMDPCAYGDCKPCDCT 280
           C P  Q+P   C    + P CQ+ +           P  DC     +PC     +    T
Sbjct: 192 CAPVQQQPSCDCAPVQQNPCCQQAQPACDCAPVQQQPACDCAPVQQNPCCQ---QQAQST 248

Query: 279 CPSGCIKTDPCACDYPKAGC 220
           C    ++ +PC C   +  C
Sbjct: 249 CDCAPVQQNPC-CQQAQPAC 267


>U00065-7|AAL02474.1| 1090|Caenorhabditis elegans Hypothetical
           protein D1044.2c protein.
          Length = 1090

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
 Frame = -3

Query: 345 GEDCTEYMDPCAYGDCKPCDCTCPSGCIKT-DPCACDYPKAGCCS 214
           G DC  Y   C+ G C P    C  GC    D  AC   +  C +
Sbjct: 326 GPDCA-YCCHCSEGTCHPISGDCQRGCATCWDGVACQTRQEKCAT 369


>U00065-6|AAL02472.1| 1051|Caenorhabditis elegans Hypothetical
           protein D1044.2a protein.
          Length = 1051

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
 Frame = -3

Query: 345 GEDCTEYMDPCAYGDCKPCDCTCPSGCIKT-DPCACDYPKAGCCS 214
           G DC  Y   C+ G C P    C  GC    D  AC   +  C +
Sbjct: 326 GPDCA-YCCHCSEGTCHPISGDCQRGCATCWDGVACQTRQEKCAT 369


>Z93393-15|CAE54926.1|  347|Caenorhabditis elegans Hypothetical
           protein Y48E1B.16 protein.
          Length = 347

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = -1

Query: 431 PRGLARDNTKNRVKSWRGLQYTGPRSCLPARIAPSTWIPALMAIANLVTALAL-QDVLKR 255
           PR  A++N       W   Q  GPR+  PA   P   +PA  A    + AL   + V +R
Sbjct: 80  PRPPAQNNLPKSQYGWN-TQAPGPRAPAPAPTRPQYGVPAPRAPQPTIPALTTKKSVFER 138

Query: 254 IPVPAITRKRVV 219
           +   A  +++ V
Sbjct: 139 LKEKAKGKEKYV 150


>Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical
           protein F15D3.2 protein.
          Length = 376

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -3

Query: 732 CHHDMWGQGPMQNITTQRHDYVPKPSVLRESFKPAHKYH 616
           CHH       +   + ++HD+V       + F+P +KYH
Sbjct: 250 CHHKGNNGHLVNEYSREKHDFVMAILKTYKEFQPTYKYH 288


>Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical
           protein C30H6.11 protein.
          Length = 460

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -1

Query: 734 PATTTCGVRVPCRTSPRNDTTTCPSRLYSGSRSNRLTSTTASNNR 600
           P TTT     P  T+    TTT P+   S + +   T+TT +  +
Sbjct: 224 PTTTTTTTTTPTTTTTTPTTTTTPATTTSETTTTTPTTTTQTTTK 268


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,144,586
Number of Sequences: 27780
Number of extensions: 513959
Number of successful extensions: 1831
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1822
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)