Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10h04
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d...    28   1.3  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    26   5.3  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   5.3  
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma...    25   9.2  

>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = -3

Query: 378 LNEVEVRIVNRDVCRT-RYEFLESVTGDPFPVTVNMICAGLLDIGGKDACQGDSGGPLI 205
           ++EV ++IVN  VC T  Y          FPV +    AG+++  G        G P+I
Sbjct: 37  VHEVRIKIVNSGVCHTDAYTLSGKDPEGLFPVILGHEGAGIVESVGPQVTTVQVGDPVI 95


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 141 PGTWAPHTRSPTRSAPPR 194
           P T AP T++PT  APP+
Sbjct: 369 PTTKAPTTKAPTSEAPPK 386


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +2

Query: 404  TLVLPQPT*ITEELSGTSAHCTGIQACATLALRVTGEDNTSTAISLSLIGTL 559
            T ++ QPT I  + +G     TG+   AT  ++ TG    +T I     G +
Sbjct: 1145 TGIISQPTGIRAQATGIMTQPTGLHTQATGMMQPTGMQPQATGIMPQATGMM 1196


>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 193

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 160 TPVAPRGQPHHDVVVYQGTAAVTLTSVLASDIEQSRADHVYGD 288
           TP+ P  QP+  V V  G A    T++  +  E+   +++ GD
Sbjct: 4   TPINPTNQPYKYVFVVIGPAGSGKTTMAKAVSEKLGFEYIEGD 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,070,155
Number of Sequences: 5004
Number of extensions: 63391
Number of successful extensions: 161
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)