Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10h04
(779 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like p... 122 2e-28
U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like p... 88 8e-18
U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like pr... 62 4e-10
Z92832-5|CAB07374.2| 292|Caenorhabditis elegans Hypothetical pr... 41 0.001
AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like... 36 0.025
Z78013-9|CAB01420.2| 297|Caenorhabditis elegans Hypothetical pr... 35 0.057
U39848-2|AAT81211.1| 279|Caenorhabditis elegans Hypothetical pr... 33 0.23
AF003134-1|AAB54144.1| 522|Caenorhabditis elegans Trypsin-like ... 31 1.2
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr... 30 1.6
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein. 30 1.6
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ... 30 1.6
Z81146-6|CAM06584.1| 151|Caenorhabditis elegans Hypothetical pr... 29 2.8
AL161712-12|CAC70144.1| 789|Caenorhabditis elegans Hypothetical... 29 3.7
Z93384-1|CAB07633.3| 342|Caenorhabditis elegans Hypothetical pr... 29 4.9
Z70203-4|CAA94107.1| 322|Caenorhabditis elegans Hypothetical pr... 29 4.9
U28735-5|AAF99955.3| 279|Caenorhabditis elegans Hypothetical pr... 29 4.9
U97408-1|AAB93344.2| 360|Caenorhabditis elegans Trypsin-like pr... 28 8.6
U41016-5|AAP46274.1| 811|Caenorhabditis elegans Hypothetical pr... 28 8.6
U41016-4|AAP46275.1| 809|Caenorhabditis elegans Hypothetical pr... 28 8.6
U41016-3|AAM51497.1| 901|Caenorhabditis elegans Hypothetical pr... 28 8.6
U41016-2|AAM51496.1| 899|Caenorhabditis elegans Hypothetical pr... 28 8.6
U29536-3|AAA68795.2| 179|Caenorhabditis elegans Hypothetical pr... 28 8.6
>U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like
protease protein 1 protein.
Length = 293
Score = 122 bits (295), Expect = 2e-28
Identities = 81/236 (34%), Positives = 118/236 (50%), Gaps = 6/236 (2%)
Frame = -3
Query: 774 YPYTVQVLYN-GQLSCGGSLITKRHVLSAGHCFIDTNGNVASPTLFSIRSGSSVLYSGGS 598
+P+TVQ+L G CGGSLI VL+A HCF PT +S+R G SG S
Sbjct: 69 WPWTVQLLSRLGHHRCGGSLIDPNFVLTAAHCFAKDR----RPTSYSVRVGGHRSGSG-S 123
Query: 597 IHSVSMIIVHERYNVPIRDN-DIAVLVLSSPVTLSASVAQACIPVQWAEVPDNSSVIHVG 421
H V+ + +H YN+ + D A++ + PV S + C+P A +N + G
Sbjct: 124 PHRVTAVSIHPWYNIGFPSSYDFAIMRIHPPVNTSTTARPICLPSLPAV--ENRLCVVTG 181
Query: 420 WGRTNVNVAQASSVLNEVEVRIVNRDVCRTRYEFLESVTGDPFPVTVNMICAGLLDIGGK 241
WG T + ++ L E+ V +++ C + ++ + P +M+CAG G
Sbjct: 182 WGSTIEGSSLSAPTLREIHVPLLSTLFCSSLPNYIGRIH---LP---SMLCAGY-SYGKI 234
Query: 240 DACQGDSGGPLIYNNI----VVGLTSWGYGCAEPMFPGVSARVSSYTNWINNTVTR 85
D+CQGDSGGPL+ + G+ SWG GCA P PGV V S + WIN + R
Sbjct: 235 DSCQGDSGGPLMCARDGHWELTGVVSWGIGCARPGMPGVYGNVHSASTWINLEMNR 290
>U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like
protease protein 2 protein.
Length = 265
Score = 87.8 bits (208), Expect = 8e-18
Identities = 63/218 (28%), Positives = 102/218 (46%), Gaps = 7/218 (3%)
Frame = -3
Query: 732 CGGSLITKRHVLSAGHCFIDTNGNVASPTLFSIRSGSSVLYSGGSIHSVSMIIVHERYNV 553
CG S++ K H+++A HCF + + V+S + ++ I + I + Y
Sbjct: 54 CGASILDKTHLITAAHCF-EEDERVSSYEVVVGDWDNNQTDGNEQIFYLQRIHFYPLYK- 111
Query: 552 PIRDNDIAVLVLSSP-VTLSASVAQACIPVQ-WAEVPDNSSVIHVGWGRTNVNVAQASSV 379
I +DIA+L + P + + C+P + + P V+ GWG + A+
Sbjct: 112 DIFSHDIAILEIPYPGIEFNEYAQPICLPSKDFVYTPGRQCVVS-GWGSMGLRYAER--- 167
Query: 378 LNEVEVRIVNRDVCRTRYEFLESVTGDPFPVTVNMICAGLLDIGGKDACQGDSGGPLIYN 199
L + I+NR C + S++ F CAG L+ GG D+CQGDSGGP
Sbjct: 168 LQAALIPIINRFDCVNSSQIYSSMSRSAF-------CAGYLE-GGIDSCQGDSGGPFACR 219
Query: 198 N-----IVVGLTSWGYGCAEPMFPGVSARVSSYTNWIN 100
++ G+ SWG GCA+ PG+ V+ Y +WI+
Sbjct: 220 REDGAFVLAGVISWGDGCAQKKQPGIYTMVAPYLSWIS 257
>U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like
protease protein 3 protein.
Length = 313
Score = 62.1 bits (144), Expect = 4e-10
Identities = 61/237 (25%), Positives = 105/237 (44%), Gaps = 18/237 (7%)
Frame = -3
Query: 747 NGQ-LSCGGSLITKRHVLSAGHCFIDTNGNVASPTLFSIRSGSSVLYSGGSIHSVSMIIV 571
NGQ + CG ++I +++A HC + + + + +R + + SV +
Sbjct: 60 NGQGILCGATVIDDFWLVTAAHCALQ----LQTRSFVYVREPKN---NRERSFSVKEAYI 112
Query: 570 HERYNVPIRDNDIAVLVLSSPVTLSASVAQACIPVQWAEV-PDNSSVIHVGWGRTNVNVA 394
H YN DNDIA+L +SS ++ + C+ +++ + + +G+G T +
Sbjct: 113 HSGYNNQTADNDIALLRISSDLS-KLGIKPVCLVHDDSKLLKQYKNGVVIGYGLTLGEDS 171
Query: 393 QA------SSVLNEVEVRIVNRDVCRTRYEFLESVTGDPFPVTVNMICAGLLDIGGKDAC 232
S L V I++ D C + FL ++ +T ICAG G
Sbjct: 172 SGEPKLINSQTLQSTSVPIISDDDCVKTWRFLSLLS---VKITGYQICAGAYLHG---TA 225
Query: 231 QGDSGGPLIYNN-----IVVGLTSWGYGCAEPM-----FPGVSARVSSYTNWINNTV 91
GDSGGPL+ + + +G+TS+G + + FPGV R+S Y WI +
Sbjct: 226 PGDSGGPLLIHKSNGEYVQIGITSYGADGLDGVIDQGKFPGVYTRISKYVPWIQGVI 282
>Z92832-5|CAB07374.2| 292|Caenorhabditis elegans Hypothetical
protein F31D4.6 protein.
Length = 292
Score = 40.7 bits (91), Expect = 0.001
Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 10/161 (6%)
Frame = -3
Query: 549 IRDNDIAVLVLSSPVTLSASVAQACIPVQWAEVPDNSSVIHVGWGRTNVNVAQASSVLNE 370
++ +D A++ + + S +V C+P + S+ GWGR ++ +++E
Sbjct: 140 LKGHDWAIVEVEKRIHFSENVRPICLPRP--NMYYTKSLAVPGWGRI---FNESGPLIHE 194
Query: 369 VEVRIVNRDVCRTRYEFLESVTGDPFPVTVNMICAGLLDIGGKDA---CQGDSGGPLIYN 199
+ +RI +RD C+ + D F ICA +++ A C GDSGG L Y
Sbjct: 195 IPMRI-DRD-CKRPWSDRLPADADDF------ICATSMNVSNYSAPRTCHGDSGGGLEYR 246
Query: 198 N------IVVGLTSWG-YGCAEPMFPGVSARVSSYTNWINN 97
+ ++ +TS+G GC M + RV Y N I N
Sbjct: 247 DDNYGRAFLIAITSFGTRGCPSNMLARFT-RVDMYLNLICN 286
Score = 33.9 bits (74), Expect = 0.13
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = -3
Query: 774 YPYTVQVLYNGQLSCGGSLITKRHVLSAGHCFIDTNGN 661
+P+ V +G GGS+I+ H+++A H FI T G+
Sbjct: 28 FPWAVSFTVDGVNRLGGSIISPYHIITAAHGFITTIGS 65
>AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like
protease protein 5 protein.
Length = 331
Score = 36.3 bits (80), Expect = 0.025
Identities = 13/21 (61%), Positives = 18/21 (85%)
Frame = -3
Query: 741 QLSCGGSLITKRHVLSAGHCF 679
++ CGG+LIT +HVL+A HCF
Sbjct: 59 EVICGGTLITLKHVLTAAHCF 79
>Z78013-9|CAB01420.2| 297|Caenorhabditis elegans Hypothetical
protein F15B9.5 protein.
Length = 297
Score = 35.1 bits (77), Expect = 0.057
Identities = 42/163 (25%), Positives = 70/163 (42%), Gaps = 19/163 (11%)
Frame = -3
Query: 732 CGGSLITKRHVLSAGHCFI--DTNGNVASPTLFSIRSGSSVLYSGGS--IHSVSMIIVHE 565
CGG LI V+++ HC D A TL + + G S +M I +
Sbjct: 46 CGGVLIAPSIVITSAHCVFSGDDFAVTAKVTLGDVHLNK---HDDGEQEFRSHAMAISKK 102
Query: 564 RYNVPIRDND-IAVLVLS-------SPVTLSASVAQACIPVQWAEVPD------NSSVIH 427
+N ND +AV+ L SP++L + + V + E +SV +
Sbjct: 103 FFNDASEANDDVAVIFLPQRADVCHSPLSLQIAKLPSTGSVNFKETAPLTQLQLETSVCY 162
Query: 426 V-GWGRTNVNVAQASSVLNEVEVRIVNRDVCRTRYEFLESVTG 301
V GWG+T A+ S + ++ V + R + + +Y ++VTG
Sbjct: 163 VAGWGKTENKTAKYSDSVRQMMVNLSVRRIGKRKYLIAKAVTG 205
>U39848-2|AAT81211.1| 279|Caenorhabditis elegans Hypothetical
protein B0286.6 protein.
Length = 279
Score = 33.1 bits (72), Expect = 0.23
Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 6/135 (4%)
Frame = -3
Query: 540 NDIAVLVLSSPVTLSASVAQACIPVQWAEVPDNSSVIHVGWGRTNVNVAQASSVLNEVEV 361
NDIAV L P+ S + AC+P P + G+ + SVL ++
Sbjct: 121 NDIAVFELEEPIEFSKDIFPACLP----SAPKIPRIRETGYKLFGYGRDPSDSVLESGKL 176
Query: 360 RIVNRDVCRTRYEFLESVTGDPFPVTVNMICAGLLDIGGKDACQGDSGGPLIYNN----- 196
++ Y F+ + D FP + C ++ G +C GDSG ++ +
Sbjct: 177 --------KSLYSFVAECS-DDFPYG-GVYCTSAVNRG--LSCDGDSGSGVVRTSDTRNV 224
Query: 195 -IVVGLTSWGYGCAE 154
++VG+ S G C E
Sbjct: 225 QVLVGVLSAGMPCPE 239
>AF003134-1|AAB54144.1| 522|Caenorhabditis elegans Trypsin-like
protease protein 7 protein.
Length = 522
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -3
Query: 735 SCGGSLITKRHVLSAGHCFIDTN 667
+C G++++ RH+L A HCF N
Sbjct: 192 TCTGTIVSPRHILIATHCFAGQN 214
>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical
protein C05C12.3 protein.
Length = 1694
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -3
Query: 240 DACQGDSGGPLIYNNIV-VGLTSWGYGCAEPMFPGVSARVSSYTNWINNT 94
D+ D G N++V +G+ SWG F G + V+ TN NNT
Sbjct: 287 DSALHDHGNHTSKNHVVAIGIASWGMLKQRSRFVGKDSTVTYATNVFNNT 336
>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
Length = 1694
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -3
Query: 240 DACQGDSGGPLIYNNIV-VGLTSWGYGCAEPMFPGVSARVSSYTNWINNT 94
D+ D G N++V +G+ SWG F G + V+ TN NNT
Sbjct: 287 DSALHDHGNHTSKNHVVAIGIASWGMLKQRSRFVGKDSTVTYATNVFNNT 336
>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
homologous cationchannel protein.
Length = 1681
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -3
Query: 240 DACQGDSGGPLIYNNIV-VGLTSWGYGCAEPMFPGVSARVSSYTNWINNT 94
D+ D G N++V +G+ SWG F G + V+ TN NNT
Sbjct: 274 DSALHDHGNHTSKNHVVAIGIASWGMLKQRSRFVGKDSTVTYATNVFNNT 323
>Z81146-6|CAM06584.1| 151|Caenorhabditis elegans Hypothetical
protein K10D11.7 protein.
Length = 151
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 605 PEYRTLLPERMLNNVGLATLPLVSIKQCPALSTCLLVISEP 727
PE++T+ P+ +N + T P + Q P S C +++ P
Sbjct: 26 PEHQTITPKFPINTDAIYTFPSKAFTQFPVNSACTWLVNIP 66
>AL161712-12|CAC70144.1| 789|Caenorhabditis elegans Hypothetical
protein Y66D12A.15 protein.
Length = 789
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = -3
Query: 600 SIHSVSMIIVHERYNVPIRDNDIAVLVLSSPVTLSASVAQACIPVQWAEVPDNSSV 433
S V +++ H RY V R +D+ +L V S + P Q E+P +
Sbjct: 162 SYGKVKLVLKHNRYFVESRHSDVMQKLLKDSVIQSCILDDRVQPAQQTELPAQEKI 217
>Z93384-1|CAB07633.3| 342|Caenorhabditis elegans Hypothetical
protein H08M01.1 protein.
Length = 342
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +1
Query: 112 SVA*DSGADAREHGLRTPVAPRGQPHHDVVVYQGTAAVTLTSVLASDIEQSRADHVYGD 288
SVA G +A + G+ P A R QP H T + L+ ++++ A +GD
Sbjct: 132 SVATQQGPNAEQSGILVPPASRQQPEHSAT---STISAPLSPASSTNMALQNAPSDHGD 187
>Z70203-4|CAA94107.1| 322|Caenorhabditis elegans Hypothetical
protein C05G5.4 protein.
Length = 322
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 628 GANAEQCGTSHVAVSVYKAVSRAQH 702
G NA + GT H+ + V+K VS A++
Sbjct: 63 GVNANKAGTEHLGLPVFKNVSEARN 87
>U28735-5|AAF99955.3| 279|Caenorhabditis elegans Hypothetical
protein F48E3.4 protein.
Length = 279
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = -3
Query: 735 SCGGSLITKRHVLSAGHCFIDTNGNVASPTLFSIRSGSSVL 613
+C G+L++ VL++ CF DT N+ + + + S+ +
Sbjct: 46 TCTGTLLSPSVVLTSSKCFPDTRKNLIAQAIIKKKDSSATM 86
>U97408-1|AAB93344.2| 360|Caenorhabditis elegans Trypsin-like
protease protein 6 protein.
Length = 360
Score = 27.9 bits (59), Expect = 8.6
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -3
Query: 732 CGGSLITKRHVLSAGHC 682
C G+L + RH+L+A HC
Sbjct: 75 CSGTLTSPRHILTATHC 91
>U41016-5|AAP46274.1| 811|Caenorhabditis elegans Hypothetical
protein R11G1.6c protein.
Length = 811
Score = 27.9 bits (59), Expect = 8.6
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
Frame = +1
Query: 73 PAAIPRHRVVNPVSVA*DSGADAREHGLRTPVAPRGQPH-----HDVVVYQGTAAVTLTS 237
P + ++ + V V +G++ RE L T P PH H+ +V T VT+ +
Sbjct: 439 PNLLTSGKLTDTVKVTNPNGSEFRET-LTTHRRPIYDPHDNFDGHEPIVPSKTTTVTVKT 497
Query: 238 VLASDIEQSRADHVYGDWEGIPGHALQKLV 327
V + E+ V+G E A QK++
Sbjct: 498 VSQTLKEKPTIQSVHGSLENAVDPATQKIL 527
>U41016-4|AAP46275.1| 809|Caenorhabditis elegans Hypothetical
protein R11G1.6d protein.
Length = 809
Score = 27.9 bits (59), Expect = 8.6
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
Frame = +1
Query: 73 PAAIPRHRVVNPVSVA*DSGADAREHGLRTPVAPRGQPH-----HDVVVYQGTAAVTLTS 237
P + ++ + V V +G++ RE L T P PH H+ +V T VT+ +
Sbjct: 439 PNLLTSGKLTDTVKVTNPNGSEFRET-LTTHRRPIYDPHDNFDGHEPIVPSKTTTVTVKT 497
Query: 238 VLASDIEQSRADHVYGDWEGIPGHALQKLV 327
V + E+ V+G E A QK++
Sbjct: 498 VSQTLKEKPTIQSVHGSLENAVDPATQKIL 527
>U41016-3|AAM51497.1| 901|Caenorhabditis elegans Hypothetical
protein R11G1.6b protein.
Length = 901
Score = 27.9 bits (59), Expect = 8.6
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
Frame = +1
Query: 73 PAAIPRHRVVNPVSVA*DSGADAREHGLRTPVAPRGQPH-----HDVVVYQGTAAVTLTS 237
P + ++ + V V +G++ RE L T P PH H+ +V T VT+ +
Sbjct: 529 PNLLTSGKLTDTVKVTNPNGSEFRET-LTTHRRPIYDPHDNFDGHEPIVPSKTTTVTVKT 587
Query: 238 VLASDIEQSRADHVYGDWEGIPGHALQKLV 327
V + E+ V+G E A QK++
Sbjct: 588 VSQTLKEKPTIQSVHGSLENAVDPATQKIL 617
>U41016-2|AAM51496.1| 899|Caenorhabditis elegans Hypothetical
protein R11G1.6a protein.
Length = 899
Score = 27.9 bits (59), Expect = 8.6
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
Frame = +1
Query: 73 PAAIPRHRVVNPVSVA*DSGADAREHGLRTPVAPRGQPH-----HDVVVYQGTAAVTLTS 237
P + ++ + V V +G++ RE L T P PH H+ +V T VT+ +
Sbjct: 529 PNLLTSGKLTDTVKVTNPNGSEFRET-LTTHRRPIYDPHDNFDGHEPIVPSKTTTVTVKT 587
Query: 238 VLASDIEQSRADHVYGDWEGIPGHALQKLV 327
V + E+ V+G E A QK++
Sbjct: 588 VSQTLKEKPTIQSVHGSLENAVDPATQKIL 617
>U29536-3|AAA68795.2| 179|Caenorhabditis elegans Hypothetical
protein F45E12.5b protein.
Length = 179
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = +1
Query: 616 NTASGANAEQCGTSHVAVSVYKAVSRAQHVP---LGDQ 720
N+A G A+ G + VYK RA+H+P LGD+
Sbjct: 64 NSALGKEADTTGKLPYCIHVYKQGRRAKHMPHAELGDK 101
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,671,168
Number of Sequences: 27780
Number of extensions: 390790
Number of successful extensions: 1124
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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