Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10h04
         (779 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...   109   3e-26
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    25   1.0  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    22   5.6  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   5.6  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   5.6  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   5.6  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   5.6  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   5.6  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   5.6  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   5.6  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   5.6  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   5.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.7  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score =  109 bits (262), Expect = 3e-26
 Identities = 69/227 (30%), Positives = 116/227 (51%), Gaps = 11/227 (4%)
 Frame = -3

Query: 750 YNGQLSCGGSLITKRHVLSAGHCFIDTNGNVASPTLFSIRSGSSVLYSGGSIHSVSMIIV 571
           Y   + CG ++I+KR+VL+A HC ID N    +  +      S    +   +HS++ +I+
Sbjct: 182 YEPGMICGATIISKRYVLTAAHCIIDENTTKLAIVVGEHDWSSKTETNATVLHSINKVII 241

Query: 570 HERYNVPIRD----NDIAVLVLSSPVTLSASVAQACIPVQ-WAEVPDNSSVIHVGWGRTN 406
           H +Y++  +D    NDIA+L     +     V  AC+P Q + +    S V  +GWG T+
Sbjct: 242 HPKYDIIEKDDWQINDIALLKTEKDIKFGDKVGPACLPFQHFLDSFAGSDVTVLGWGHTS 301

Query: 405 VNVAQASSVLNEVEVRIVNRDVCRTRYEFLESVTGDPFPVTVNMICAGLLDIGGKDACQG 226
            N    S +L +  + ++ +  C   Y++  +       + VN +CA      GKDACQ 
Sbjct: 302 FN-GMLSHILQKTTLNMLTQVEC---YKYYGN-------IMVNAMCA---YAKGKDACQM 347

Query: 225 DSGGPLIYNN------IVVGLTSWGYGCAEPMFPGVSARVSSYTNWI 103
           DSGGP+++ N      + +G+ SWG  C +  +P  + +V SY +WI
Sbjct: 348 DSGGPVLWQNPRTKRLVNIGIISWGAECGK--YPNGNTKVGSYIDWI 392


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -2

Query: 418 GQD*CERSSSFFSPQRG*GPDSQQGCLPDSVRVSGERDR 302
           G D     SSFF    G  PD Q+  + +   + G+ DR
Sbjct: 349 GHDTTASGSSFFLAVMGCHPDIQEKVIQELDEIFGDSDR 387


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 508 CDPERERGASLYT 470
           C PER+RG   YT
Sbjct: 4   CVPERKRGRQTYT 16


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 597 IHSVSMIIVHERYNVPIRDND 535
           IH +  ++V  RYN P + +D
Sbjct: 346 IHVLPRLLVMRRYNTPSKRSD 366


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 228 LDKRPCLRYRAVPRRSCLR*LGRDPRSRSPETRTES 335
           L K+  L Y    RR+  + L +  +SRSPE+R  S
Sbjct: 55  LKKKMILEYEL--RRAREKKLSKRSKSRSPESRGRS 88


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 228 LDKRPCLRYRAVPRRSCLR*LGRDPRSRSPETRTES 335
           L K+  L Y    RR+  + L +  +SRSPE+R  S
Sbjct: 55  LKKKMILEYEL--RRAREKKLSKRSKSRSPESRGRS 88


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 228 LDKRPCLRYRAVPRRSCLR*LGRDPRSRSPETRTES 335
           L K+  L Y    RR+  + L +  +SRSPE+R  S
Sbjct: 55  LKKKMILEYEL--RRAREKKLSKRSKSRSPESRGRS 88


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 228 LDKRPCLRYRAVPRRSCLR*LGRDPRSRSPETRTES 335
           L K+  L Y    RR+  + L +  +SRSPE+R  S
Sbjct: 55  LKKKMILEYEL--RRAREKKLSKRSKSRSPESRGRS 88


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 228 LDKRPCLRYRAVPRRSCLR*LGRDPRSRSPETRTES 335
           L K+  L Y    RR+  + L +  +SRSPE+R  S
Sbjct: 55  LKKKMILEYEL--RRAREKKLSKRSKSRSPESRGRS 88


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 228 LDKRPCLRYRAVPRRSCLR*LGRDPRSRSPETRTES 335
           L K+  L Y    RR+  + L +  +SRSPE+R  S
Sbjct: 55  LKKKMILEYEL--RRAREKKLSKRSKSRSPESRGRS 88


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 228 LDKRPCLRYRAVPRRSCLR*LGRDPRSRSPETRTES 335
           L K+  L Y    RR+  + L +  +SRSPE+R  S
Sbjct: 55  LKKKMILEYEL--RRAREKKLSKRSKSRSPESRGRS 88


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 228 LDKRPCLRYRAVPRRSCLR*LGRDPRSRSPETRTES 335
           L K+  L Y    RR+  + L +  +SRSPE+R  S
Sbjct: 55  LKKKMILEYEL--RRAREKKLSKRSKSRSPESRGRS 88


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 40  ERRGAPARQRSPAAIP 87
           E+  AP+ Q SP +IP
Sbjct: 117 EKLAAPSSQASPTSIP 132


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,870
Number of Sequences: 438
Number of extensions: 5482
Number of successful extensions: 17
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)