Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10h03
         (822 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    28   1.8  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   3.2  
SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces po...    27   3.2  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    26   5.6  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    25   9.8  
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ...    25   9.8  

>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 89  SLENKISVYTKNNSYLAGASNCSEWMFGNQNKLSKN 196
           S   K+ V ++NNSYL G +  +   F N N +S N
Sbjct: 90  SSPGKLPVPSRNNSYLQGTAESNSGNFAN-NSISNN 124


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -2

Query: 734 ASTRKISKPSTSASKESCSPAK*CTSSCGSIDPGYDSSSTSAA 606
           +ST   + PS+S+S  S S +   +SS  S      SSS+S++
Sbjct: 147 SSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 189



 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -2

Query: 731 STRKISKPSTSASKESCSPAK*CTSSCGSIDPGYDSSSTSAA 606
           S+   S PS+S++  + SP+   +SS  S      SSS+S++
Sbjct: 137 SSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSS 178


>SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 295

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
 Frame = -2

Query: 278 SINFARKMIVLIKKSLI-VLFQRCAYTF--NSWKVYFDY--QTSTLSNLRHLPSSYYF*C 114
           SI+  + + ++I+ S I  L Q+C Y +    W+    Y  Q S   N +HL   YY+  
Sbjct: 65  SIDDLQSLFMIIENSNIDELKQQCFYYYLLKDWEKSETYSEQVSLPKNYQHLMDGYYYLD 124

Query: 113 KRKF 102
           + KF
Sbjct: 125 RLKF 128


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -2

Query: 728 TRKISKPSTSASKESCSPAK*CTSSCGSIDPGYDSSSTS 612
           T   S PS+S+S  S SP+   + S  S      SSS+S
Sbjct: 148 TSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSS 186



 Score = 25.8 bits (54), Expect = 7.4
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -2

Query: 734 ASTRKISKPSTSASKESCSPAK*CTSSCGSIDPGYDSSSTSAA 606
           +S+   S PS+S+SK S S     +SS  S      SSS+ ++
Sbjct: 157 SSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSS 199


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -2

Query: 704 TSASKESCSPAK*CTSSCGSIDPGYDSSSTSAALAIRADG 585
           T+    S SP+   TS  GS++      S+SA  AI+++G
Sbjct: 370 TNGGGPSDSPSSSSTSVRGSVNDSNSPISSSATFAIQSNG 409


>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 252 CFNKKIIDSFISEMCLYI*FLES 184
           C N+KIID  I++MC +  + +S
Sbjct: 118 CTNQKIIDENITDMCQHSPYFKS 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,848,468
Number of Sequences: 5004
Number of extensions: 53858
Number of successful extensions: 163
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)