Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10h02
(832 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 28 1.4
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 28 1.9
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 27 4.3
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 27 4.3
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 26 5.7
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 26 5.7
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 7.5
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|... 26 7.5
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe... 25 10.0
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 25 10.0
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = -2
Query: 228 SKPRYLGSWLPDRPGVTSPRC--WRRAPSS 145
S P Y SW+P + S RC W +PSS
Sbjct: 282 SHPLYSSSWIPTLHDLVSTRCSVWLTSPSS 311
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 27.9 bits (59), Expect = 1.9
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 527 KQHSNQRPPQHR-PHEHSRPVLTPPRDIRIAA 619
K + +Q+P H PH+H + + PP D I +
Sbjct: 242 KNNKDQKPKNHEAPHQHPQQKVVPPDDPAIVS 273
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +2
Query: 533 HSNQRPPQHRPHEHSRPVLTPP 598
H + RPP H PH H PP
Sbjct: 170 HPHTRPPHHPPHPHFHNNNYPP 191
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 26.6 bits (56), Expect = 4.3
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +1
Query: 682 GSFTQSLNISTLILKISLARRFCRLISNPMACW*IFF 792
GS T SLN S L KISL +C + W + F
Sbjct: 416 GSITFSLNWSRLGQKISLPIMWCSVFDRSAVFWGLVF 452
>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 26.2 bits (55), Expect = 5.7
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +2
Query: 497 HVAWHEQRQVKQHSNQRPPQHRPHEHSRP 583
H +HE+RQ + PP R E S P
Sbjct: 28 HTGFHEKRQGASSESLIPPAQRSSEESMP 56
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 26.2 bits (55), Expect = 5.7
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +2
Query: 554 QHRPHEHSRPVLTPPRDIRIAAP-TTVLRRTVDRQLDVEHLPSSV 685
Q PH HS +++ D+ IA+P + V L+ H P S+
Sbjct: 169 QSSPHSHSASIISDGSDMDIASPIRSTESDMVSEALNAGHPPPSL 213
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.8 bits (54), Expect = 7.5
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 512 EQRQVKQHSNQRPPQHRPHEHSRPVLTPP 598
+ R+ ++ PPQ E +RP L PP
Sbjct: 748 KHRETEEEDEGPPPQPARPESTRPALAPP 776
>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 809
Score = 25.8 bits (54), Expect = 7.5
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 255 LQLSRTQYTCFLSAASSISSPFIMDSNSLGST 350
L+LS+ + FL SSISSP DS+S ST
Sbjct: 58 LRLSKIK-DVFLMQGSSISSPDTYDSSSSSST 88
>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 580
Score = 25.4 bits (53), Expect = 10.0
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +3
Query: 138 APGCSAHASSTLVTSRPAGLAASFPSIAALSSFPSFP 248
A GC HA + R + P+I SSFP P
Sbjct: 539 AIGCPPHAGGGIGLERVVMFYLNLPNIRLASSFPRDP 575
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 10.0
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Frame = +3
Query: 75 NSTAFLL*PHLNIFQATSSGLAPGCSAHASSTLVTSRPAGL---AASFPSIAALSSFPSF 245
N+ + + P ++ +T+SGL S SST S +AS S ++ S S
Sbjct: 973 NTNSLTVKPESSLSSSTTSGLTSSSSTIPSSTRSESNSESASTSSASKRSSSSTSLVQSN 1032
Query: 246 PIILQLSRTQYTCFLSAASSISSP 317
P+ +S Y S S + +P
Sbjct: 1033 PVKTVVSLESYKFTTSKISLVKNP 1056
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,831,151
Number of Sequences: 5004
Number of extensions: 51556
Number of successful extensions: 178
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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