Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10h02
(832 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0238 + 1854070-1854344,1854621-1854712,1854852-1855045,185... 34 0.16
01_06_0451 - 29476892-29477516,29477600-29477843,29478313-294787... 33 0.21
10_03_0007 - 6956215-6956223,6957082-6957300,6957874-6957978,695... 32 0.64
07_01_0945 - 7973736-7974275,7974446-7974580 31 1.5
12_01_0615 + 5072267-5073253 30 2.0
03_05_0267 - 22538631-22539452 30 2.6
02_01_0377 + 2728892-2729187,2729483-2729544,2730516-2730570,273... 30 2.6
06_03_0927 + 26015956-26018230,26018323-26018471,26018550-260186... 29 3.4
09_04_0627 - 19061106-19061474,19062067-19062909,19063395-190635... 29 4.5
03_02_0283 - 7078754-7078856,7079358-7079431,7079995-7080090,708... 29 4.5
10_07_0113 - 12993300-12993413,12993493-12993775,12993856-129940... 29 6.0
09_04_0634 - 19132916-19134033,19134716-19135915,19136002-191361... 29 6.0
05_05_0290 - 23879064-23880035 29 6.0
04_04_1465 + 33794225-33794389,33794471-33794597,33794669-337947... 29 6.0
02_05_1312 + 35642687-35642923,35643712-35643831,35644468-356445... 29 6.0
12_02_1057 + 25733376-25735439 28 7.9
06_02_0177 + 12644270-12644581,12645717-12646054,12646291-12646489 28 7.9
02_02_0200 - 7718760-7718816,7718910-7719011,7719643-7719726,771... 28 7.9
>03_01_0238 +
1854070-1854344,1854621-1854712,1854852-1855045,
1855529-1855568,1855734-1855815,1856972-1857049,
1857144-1857269,1857544-1857665,1858018-1858057,
1858250-1858324,1858414-1858585
Length = 431
Score = 33.9 bits (74), Expect = 0.16
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 325 WTPTASAPLATARGRRRSENETSPSLPYP 411
W + P A ARGRRR+ PSLP+P
Sbjct: 61 WRIDGNKPAAAARGRRRASLTAMPSLPFP 89
>01_06_0451 -
29476892-29477516,29477600-29477843,29478313-29478714,
29481164-29481358,29481418-29481537,29481615-29481683,
29481901-29481999,29483857-29483946,29484049-29484180,
29485062-29485173
Length = 695
Score = 33.5 bits (73), Expect = 0.21
Identities = 14/24 (58%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Frame = +2
Query: 527 KQHSNQRPPQH-RPHEHSRPVLTP 595
KQHS+ PP H RPH+ S PV++P
Sbjct: 192 KQHSSNLPPSHHRPHKGSFPVISP 215
>10_03_0007 -
6956215-6956223,6957082-6957300,6957874-6957978,
6958062-6958175,6958342-6958467,6958583-6958697,
6958791-6958867,6958956-6959179,6959848-6959953,
6960065-6960163,6960282-6960467,6960611-6960613
Length = 460
Score = 31.9 bits (69), Expect = 0.64
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +2
Query: 515 QRQVKQHSNQRPPQHRPHEHSRPVLTPPRDIRIAAPTTV-LRRTVDRQLDVEHLPSS 682
+R+ +Q R +H H RP+L PRD R + TT + + +++D E+ S
Sbjct: 12 RRRREQQQQGREQRHHHHHRRRPLLLQPRDERCVSCTTFNILAPIYKRMDSENCRES 68
>07_01_0945 - 7973736-7974275,7974446-7974580
Length = 224
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 156 APSSPALVPRTWPGIYSDAATTGRRCCSTTCPPVAPLAA 40
AP+ P P WP + S A + C + PVAPL++
Sbjct: 157 APAPPLSSPCRWPRVASTGARQWQGCHAAWLSPVAPLSS 195
>12_01_0615 + 5072267-5073253
Length = 328
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 640 YGRSPTRRRALAEFGSFTQSLNISTLILKISLARRFC 750
YGR+P RRR+ E G T ++ L+L+ RR C
Sbjct: 72 YGRTPFRRRSRRESGKPTPLRDLIGLLLEKDPGRRLC 108
>03_05_0267 - 22538631-22539452
Length = 273
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -2
Query: 174 PRCWRRAPSSPALVPRTWPGIYSDAATTGRRCCSTTCPPVAP 49
PR W +PSSP P P S +++ R CS P +P
Sbjct: 178 PRWWPCSPSSPPASPSPSPARTSPPSSSPSRGCSARRPTPSP 219
>02_01_0377 +
2728892-2729187,2729483-2729544,2730516-2730570,
2730784-2730858,2730980-2731054,2731155-2731202,
2731548-2732357,2732450-2732498,2733157-2733266,
2733381-2733488,2733920-2733980
Length = 582
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +1
Query: 628 CTAPY-GRSPTRRRALAEFGSFTQSL 702
C APY G+S TRR+ L + FTQ L
Sbjct: 126 CDAPYNGQSNTRRKGLMTYKQFTQKL 151
>06_03_0927 +
26015956-26018230,26018323-26018471,26018550-26018618,
26018701-26018853,26018927-26019090,26019207-26019354,
26020348-26020470,26020560-26020647,26020781-26020950
Length = 1112
Score = 29.5 bits (63), Expect = 3.4
Identities = 25/70 (35%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +2
Query: 44 ARGATGGHVVEQHRLPVVAAS-EYIPGHVLGTSAGLLGARLQHLGDVTPGRSGSQLPKYR 220
A G T H V R + A E IP VL +GL H P + QLP
Sbjct: 345 AYGYTHMHPVPHEREMMYAQQVEGIPNTVLIDPSGLHQHVYVHQQQQVPPQ---QLPSTY 401
Query: 221 GFEQLPVLPD 250
GF Q+PV+P+
Sbjct: 402 GFNQIPVIPN 411
>09_04_0627 -
19061106-19061474,19062067-19062909,19063395-19063501,
19064301-19064332,19064384-19064663,19065092-19065475,
19066730-19066803,19067244-19067310,19067415-19067486,
19067941-19068000,19068683-19068734,19068874-19068943,
19069110-19069372
Length = 890
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = -2
Query: 195 DRPGVTSPRCWRRAPSSPALVPRTWPGIYSD-AATTGRRCC 76
D + PR RR+P+ P L+P P D RRCC
Sbjct: 369 DAISYSHPRAKRRSPTPPGLIPVGLPTCNPDLIEVEDRRCC 409
>03_02_0283 -
7078754-7078856,7079358-7079431,7079995-7080090,
7080145-7080270,7080856-7080939,7081458-7081506,
7081630-7081688,7081908-7081925,7082141-7082620
Length = 362
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -2
Query: 198 PDRPGVTSPRCWRRAPSSPALVPRTWPGIYSDAATTGRRCCSTTCPPVAP 49
P RP TSP A +SP +PR + + AA++ RR ++ P P
Sbjct: 6 PQRPPATSPPAPAAAAASPQPLPRAF---LAAAASSPRRAAASPAPAPPP 52
>10_07_0113 -
12993300-12993413,12993493-12993775,12993856-12994026,
12994104-12994948,12995035-12995307,12995549-12995953
Length = 696
Score = 28.7 bits (61), Expect = 6.0
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +2
Query: 521 QVKQHSNQRPPQHRPHEHSRPVLTPPRDIRIAAPTTVLRRTVDRQLDVE 667
Q +HS + RP SRP LT P ++ P V +R D QL +
Sbjct: 305 QWPKHSIEINITPRPAPSSRPPLTRPHQTVVSLPPAVEQRDEDLQLQYD 353
>09_04_0634 -
19132916-19134033,19134716-19135915,19136002-19136106,
19136273-19136315,19137622-19137740,19138074-19138172,
19138264-19138480
Length = 966
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 237 PSFPIILQLSRTQYTCFLSAASSISSPFIMD 329
P PII Q+S +Q+ L S +PFI+D
Sbjct: 508 PEVPIIGQVSASQHVALLMDQVSTKNPFILD 538
>05_05_0290 - 23879064-23880035
Length = 323
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +2
Query: 122 HVLGTSAGLLGARLQHLGDVTPGRSGSQLPKYRGFEQLPVL 244
+VLG LL LQHL + P R+G+ K E LP +
Sbjct: 154 YVLGAGLSLL---LQHLAESDPSRNGTPPAKKEAVEALPTV 191
>04_04_1465 +
33794225-33794389,33794471-33794597,33794669-33794799,
33795153-33795254,33795337-33795420,33795504-33795731,
33795934-33796038,33796376-33796731,33797146-33797303,
33797399-33797505,33797852-33798061
Length = 590
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 509 HEQRQVKQHSNQRPPQHRPHEHSRPVLTPPRDIRIAA 619
H +Q+K ++ P+H PH + PV R R A+
Sbjct: 545 HALKQIKGDKREKHPRHVPHAEAAPVDQWDRSFRAAS 581
>02_05_1312 +
35642687-35642923,35643712-35643831,35644468-35644534,
35644673-35644694,35645053-35645152,35645282-35645414,
35645483-35645517,35645708-35646409,35646789-35647121,
35647337-35647601,35647665-35647999,35648105-35648177,
35648271-35648356,35648479-35648598,35648674-35648741,
35648825-35648882
Length = 917
Score = 28.7 bits (61), Expect = 6.0
Identities = 18/51 (35%), Positives = 20/51 (39%)
Frame = +2
Query: 545 RPPQHRPHEHSRPVLTPPRDIRIAAPTTVLRRTVDRQLDVEHLPSSVPLLN 697
RPP RP E R V T P +R P D DVE + LN
Sbjct: 42 RPPAMRPEEEGRGVATRPGALRERKPPPNAFNAPDDDEDVEKTDQLLEPLN 92
>12_02_1057 + 25733376-25735439
Length = 687
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 48 EAPPAGM*SNSTAFLL*PHLNIFQATSSGLAPGCSAHASSTLVTSR 185
EAPP + + P ++ F TSS +A G S+ ++ T +SR
Sbjct: 633 EAPPPSLPARMPVATFLPPVDAFNHTSSSVATGSSSASTDTTRSSR 678
>06_02_0177 + 12644270-12644581,12645717-12646054,12646291-12646489
Length = 282
Score = 28.3 bits (60), Expect = 7.9
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Frame = +3
Query: 108 NIFQATSSGLAPGCSAHASSTLVTSRPAGLAASF-PSIAALSSFPSFPIILQLSRTQYTC 284
++ + TSS L+ C AH+SS SRP F + AA SS PS I + ++
Sbjct: 10 SLLRRTSSALSRRC-AHSSSAAAPSRPPVPLPRFRAAAAAASSSPSSGI----TSRRFLA 64
Query: 285 FLSAASSISSPFIMDSN---SLGSTRDCARQASE 377
S +SS S D N + S +C Q+ E
Sbjct: 65 SKSPSSSSPSKASADENLVRVIDSEIECIVQSEE 98
>02_02_0200 -
7718760-7718816,7718910-7719011,7719643-7719726,
7719821-7719916,7720016-7720066,7720162-7720302,
7720717-7720773,7720864-7720938,7721033-7721305,
7721382-7721441,7721531-7721620,7722519-7722638
Length = 401
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 26 DSPXXAARGATGGHVVEQHRLPVVAASEYIPGHVLGTSAG 145
D P AA A E+H ++ S+ + GH++ T+ G
Sbjct: 23 DQPRSAAAAAAVAPAGEKHGASLMEGSDPVTGHIISTTIG 62
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,170,583
Number of Sequences: 37544
Number of extensions: 399696
Number of successful extensions: 1681
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1671
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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