Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10h02
(832 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB065914-1|BAC06129.1| 1464|Homo sapiens seven transmembrane hel... 32 2.2
AL356913-2|CAI22674.1| 828|Homo sapiens SH3-domain GRB2-like (e... 31 5.1
AL354978-6|CAH71846.1| 828|Homo sapiens SH3-domain GRB2-like (e... 31 5.1
AL139147-3|CAI21943.1| 828|Homo sapiens SH3-domain GRB2-like (e... 31 5.1
AL137724-1|CAB70894.1| 439|Homo sapiens hypothetical protein pr... 31 5.1
AC078834-1|AAS01989.1| 439|Homo sapiens unknown protein. 31 5.1
AB210039-1|BAE06121.1| 856|Homo sapiens DKFZp761D221 variant pr... 31 5.1
X74301-1|CAA52354.1| 1130|Homo sapiens (MHC) class II transactiv... 31 6.8
U31931-1|AAA92364.1| 353|Homo sapiens class II MHC mutant RJ2.2... 31 6.8
U18288-1|AAA88862.1| 884|Homo sapiens MHC class II transactivat... 31 6.8
U18259-1|AAA88861.1| 1130|Homo sapiens MHC class II transactivat... 31 6.8
EF064747-1|ABK41930.1| 1130|Homo sapiens class II, major histoco... 31 6.8
AY699071-1|AAU06586.1| 1107|Homo sapiens CIITA IV protein. 31 6.8
AY084054-1|AAM15723.1| 546|Homo sapiens MHC class II transactiv... 31 6.8
AF410154-1|AAL04118.1| 932|Homo sapiens MHC2TA protein. 31 6.8
AB067470-1|BAB67776.1| 1480|Homo sapiens KIAA1883 protein protein. 31 6.8
D86957-1|BAA13193.1| 508|Homo sapiens KIAA0202 protein. 30 8.9
D86425-1|BAA13087.1| 1376|Homo sapiens osteonidogen protein. 30 8.9
AF440762-1|AAO13879.1| 562|Homo sapiens septin SEPT8_v2 protein. 30 8.9
AF440761-1|AAO13878.1| 508|Homo sapiens septin SEPT8_v1* protein. 30 8.9
AF179995-1|AAG09407.1| 508|Homo sapiens septin 2 protein. 30 8.9
AB009799-1|BAA24112.1| 1376|Homo sapiens osteonidogen protein. 30 8.9
>AB065914-1|BAC06129.1| 1464|Homo sapiens seven transmembrane helix
receptor protein.
Length = 1464
Score = 32.3 bits (70), Expect = 2.2
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -2
Query: 222 PRYL-GSWLPDRPGVTSPRCWRRAPSSPALVPRTWPGIYSDAATT 91
PR L SW P PG PR R + + +PRTWP S A T
Sbjct: 848 PRALPSSWTPPPPG--RPRAARAGTTCRSTLPRTWPTARSPAWVT 890
>AL356913-2|CAI22674.1| 828|Homo sapiens SH3-domain GRB2-like
(endophilin) interacting protein 1 protein.
Length = 828
Score = 31.1 bits (67), Expect = 5.1
Identities = 24/76 (31%), Positives = 31/76 (40%)
Frame = -2
Query: 246 GRTGSCSKPRYLGSWLPDRPGVTSPRCWRRAPSSPALVPRTWPGIYSDAATTGRRCCSTT 67
G T S P + L T P R PS P L P PG+ + S++
Sbjct: 435 GTTSGASSPARPATPLVPCRSTTPPPPPPRPPSRPKLPPGK-PGVGDVSRPFSPPIHSSS 493
Query: 66 CPPVAPLAAXXGESSL 19
PP+APLA SS+
Sbjct: 494 PPPIAPLARAESTSSI 509
>AL354978-6|CAH71846.1| 828|Homo sapiens SH3-domain GRB2-like
(endophilin) interacting protein 1 protein.
Length = 828
Score = 31.1 bits (67), Expect = 5.1
Identities = 24/76 (31%), Positives = 31/76 (40%)
Frame = -2
Query: 246 GRTGSCSKPRYLGSWLPDRPGVTSPRCWRRAPSSPALVPRTWPGIYSDAATTGRRCCSTT 67
G T S P + L T P R PS P L P PG+ + S++
Sbjct: 435 GTTSGASSPARPATPLVPCRSTTPPPPPPRPPSRPKLPPGK-PGVGDVSRPFSPPIHSSS 493
Query: 66 CPPVAPLAAXXGESSL 19
PP+APLA SS+
Sbjct: 494 PPPIAPLARAESTSSI 509
>AL139147-3|CAI21943.1| 828|Homo sapiens SH3-domain GRB2-like
(endophilin) interacting protein 1 protein.
Length = 828
Score = 31.1 bits (67), Expect = 5.1
Identities = 24/76 (31%), Positives = 31/76 (40%)
Frame = -2
Query: 246 GRTGSCSKPRYLGSWLPDRPGVTSPRCWRRAPSSPALVPRTWPGIYSDAATTGRRCCSTT 67
G T S P + L T P R PS P L P PG+ + S++
Sbjct: 435 GTTSGASSPARPATPLVPCRSTTPPPPPPRPPSRPKLPPGK-PGVGDVSRPFSPPIHSSS 493
Query: 66 CPPVAPLAAXXGESSL 19
PP+APLA SS+
Sbjct: 494 PPPIAPLARAESTSSI 509
>AL137724-1|CAB70894.1| 439|Homo sapiens hypothetical protein
protein.
Length = 439
Score = 31.1 bits (67), Expect = 5.1
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 530 QHSNQRPPQHRPHEHSRPVLTPP 598
QH Q PPQH+ H H + PP
Sbjct: 68 QHPPQHPPQHQHHHHHHHLSVPP 90
>AC078834-1|AAS01989.1| 439|Homo sapiens unknown protein.
Length = 439
Score = 31.1 bits (67), Expect = 5.1
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 530 QHSNQRPPQHRPHEHSRPVLTPP 598
QH Q PPQH+ H H + PP
Sbjct: 68 QHPPQHPPQHQHHHHHHHLSVPP 90
>AB210039-1|BAE06121.1| 856|Homo sapiens DKFZp761D221 variant
protein protein.
Length = 856
Score = 31.1 bits (67), Expect = 5.1
Identities = 24/76 (31%), Positives = 31/76 (40%)
Frame = -2
Query: 246 GRTGSCSKPRYLGSWLPDRPGVTSPRCWRRAPSSPALVPRTWPGIYSDAATTGRRCCSTT 67
G T S P + L T P R PS P L P PG+ + S++
Sbjct: 463 GTTSGASSPARPATPLVPCRSTTPPPPPPRPPSRPKLPPGK-PGVGDVSRPFSPPIHSSS 521
Query: 66 CPPVAPLAAXXGESSL 19
PP+APLA SS+
Sbjct: 522 PPPIAPLARAESTSSI 537
>X74301-1|CAA52354.1| 1130|Homo sapiens (MHC) class II
transactivator protein.
Length = 1130
Score = 30.7 bits (66), Expect = 6.8
Identities = 19/46 (41%), Positives = 22/46 (47%)
Frame = -2
Query: 198 PDRPGVTSPRCWRRAPSSPALVPRTWPGIYSDAATTGRRCCSTTCP 61
PDRPG TSP APS+ L P + S A T + T CP
Sbjct: 281 PDRPGSTSP----FAPSATDLPSMPEPALTSRANMTEHKTSPTQCP 322
>U31931-1|AAA92364.1| 353|Homo sapiens class II MHC mutant RJ2.2.5
protein.
Length = 353
Score = 30.7 bits (66), Expect = 6.8
Identities = 19/46 (41%), Positives = 22/46 (47%)
Frame = -2
Query: 198 PDRPGVTSPRCWRRAPSSPALVPRTWPGIYSDAATTGRRCCSTTCP 61
PDRPG TSP APS+ L P + S A T + T CP
Sbjct: 281 PDRPGSTSP----FAPSATDLPSMPEPALTSRANMTEHKTSPTQCP 322
>U18288-1|AAA88862.1| 884|Homo sapiens MHC class II transactivator
CIITA protein.
Length = 884
Score = 30.7 bits (66), Expect = 6.8
Identities = 19/46 (41%), Positives = 22/46 (47%)
Frame = -2
Query: 198 PDRPGVTSPRCWRRAPSSPALVPRTWPGIYSDAATTGRRCCSTTCP 61
PDRPG TSP APS+ L P + S A T + T CP
Sbjct: 233 PDRPGSTSP----FAPSATDLPSMPEPALTSRANMTEHKTSPTQCP 274
>U18259-1|AAA88861.1| 1130|Homo sapiens MHC class II transactivator
CIITA protein.
Length = 1130
Score = 30.7 bits (66), Expect = 6.8
Identities = 19/46 (41%), Positives = 22/46 (47%)
Frame = -2
Query: 198 PDRPGVTSPRCWRRAPSSPALVPRTWPGIYSDAATTGRRCCSTTCP 61
PDRPG TSP APS+ L P + S A T + T CP
Sbjct: 281 PDRPGSTSP----FAPSATDLPSMPEPALTSRANMTEHKTSPTQCP 322
>EF064747-1|ABK41930.1| 1130|Homo sapiens class II, major
histocompatibility complex, transactivator protein.
Length = 1130
Score = 30.7 bits (66), Expect = 6.8
Identities = 19/46 (41%), Positives = 22/46 (47%)
Frame = -2
Query: 198 PDRPGVTSPRCWRRAPSSPALVPRTWPGIYSDAATTGRRCCSTTCP 61
PDRPG TSP APS+ L P + S A T + T CP
Sbjct: 281 PDRPGSTSP----FAPSATDLPSMPEPALTSRANMTEHKTSPTQCP 322
>AY699071-1|AAU06586.1| 1107|Homo sapiens CIITA IV protein.
Length = 1107
Score = 30.7 bits (66), Expect = 6.8
Identities = 19/46 (41%), Positives = 22/46 (47%)
Frame = -2
Query: 198 PDRPGVTSPRCWRRAPSSPALVPRTWPGIYSDAATTGRRCCSTTCP 61
PDRPG TSP APS+ L P + S A T + T CP
Sbjct: 258 PDRPGSTSP----FAPSATDLPSMPEPALTSRANMTEHKTSPTQCP 299
>AY084054-1|AAM15723.1| 546|Homo sapiens MHC class II
transactivator CIITAmed protein.
Length = 546
Score = 30.7 bits (66), Expect = 6.8
Identities = 19/46 (41%), Positives = 22/46 (47%)
Frame = -2
Query: 198 PDRPGVTSPRCWRRAPSSPALVPRTWPGIYSDAATTGRRCCSTTCP 61
PDRPG TSP APS+ L P + S A T + T CP
Sbjct: 232 PDRPGSTSP----FAPSATDLPSMPEPALTSRANMTEHKTSPTQCP 273
>AF410154-1|AAL04118.1| 932|Homo sapiens MHC2TA protein.
Length = 932
Score = 30.7 bits (66), Expect = 6.8
Identities = 19/46 (41%), Positives = 22/46 (47%)
Frame = -2
Query: 198 PDRPGVTSPRCWRRAPSSPALVPRTWPGIYSDAATTGRRCCSTTCP 61
PDRPG TSP APS+ L P + S A T + T CP
Sbjct: 281 PDRPGSTSP----FAPSATDLPSMPEPALTSRANMTEHKTSPTQCP 322
>AB067470-1|BAB67776.1| 1480|Homo sapiens KIAA1883 protein protein.
Length = 1480
Score = 30.7 bits (66), Expect = 6.8
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -2
Query: 237 GSCSKPRYLGSWLPDRPGVTSPRCWRRAPSSPALVPRTW 121
GS +P + W P PGV +P+ + P LV TW
Sbjct: 566 GSPPEPLFPNDWDPLDPGVPAPQAPQAPSEVPQLVSETW 604
>D86957-1|BAA13193.1| 508|Homo sapiens KIAA0202 protein.
Length = 508
Score = 30.3 bits (65), Expect = 8.9
Identities = 16/59 (27%), Positives = 23/59 (38%)
Frame = +2
Query: 62 GHVVEQHRLPVVAASEYIPGHVLGTSAGLLGARLQHLGDVTPGRSGSQLPKYRGFEQLP 238
G + RL VAA +P H G + L+ + P L + GF+ LP
Sbjct: 52 GRSASRSRLVPVAAPALVPAHPPGAELAMAATDLERFSNAEPEPRSLSLGGHVGFDSLP 110
>D86425-1|BAA13087.1| 1376|Homo sapiens osteonidogen protein.
Length = 1376
Score = 30.3 bits (65), Expect = 8.9
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +1
Query: 325 WTPTASAPLATARGRRRSENETSP--SLPYPI 414
W PTAS+PL T+ G+R SP S P P+
Sbjct: 78 WAPTASSPLRTSPGKRSMWTMISPPTSRPSPL 109
>AF440762-1|AAO13879.1| 562|Homo sapiens septin SEPT8_v2 protein.
Length = 562
Score = 30.3 bits (65), Expect = 8.9
Identities = 16/59 (27%), Positives = 23/59 (38%)
Frame = +2
Query: 62 GHVVEQHRLPVVAASEYIPGHVLGTSAGLLGARLQHLGDVTPGRSGSQLPKYRGFEQLP 238
G + RL VAA +P H G + L+ + P L + GF+ LP
Sbjct: 52 GRSASRSRLVPVAAPALVPAHPPGAELAMAATDLERFSNAEPEPRSLSLGGHVGFDSLP 110
>AF440761-1|AAO13878.1| 508|Homo sapiens septin SEPT8_v1* protein.
Length = 508
Score = 30.3 bits (65), Expect = 8.9
Identities = 16/59 (27%), Positives = 23/59 (38%)
Frame = +2
Query: 62 GHVVEQHRLPVVAASEYIPGHVLGTSAGLLGARLQHLGDVTPGRSGSQLPKYRGFEQLP 238
G + RL VAA +P H G + L+ + P L + GF+ LP
Sbjct: 52 GRSASRSRLVPVAAPALVPAHPPGAELAMAATDLERFSNAEPEPRSLSLGGHVGFDSLP 110
>AF179995-1|AAG09407.1| 508|Homo sapiens septin 2 protein.
Length = 508
Score = 30.3 bits (65), Expect = 8.9
Identities = 16/59 (27%), Positives = 23/59 (38%)
Frame = +2
Query: 62 GHVVEQHRLPVVAASEYIPGHVLGTSAGLLGARLQHLGDVTPGRSGSQLPKYRGFEQLP 238
G + RL VAA +P H G + L+ + P L + GF+ LP
Sbjct: 52 GRSASRSRLVPVAAPALVPAHPPGAELAMAATDLERFSNAEPEPRSLSLGGHVGFDSLP 110
>AB009799-1|BAA24112.1| 1376|Homo sapiens osteonidogen protein.
Length = 1376
Score = 30.3 bits (65), Expect = 8.9
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +1
Query: 325 WTPTASAPLATARGRRRSENETSP--SLPYPI 414
W PTAS+PL T+ G+R SP S P P+
Sbjct: 78 WAPTASSPLRTSPGKRSMWTMISPPTSRPSPL 109
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,400,535
Number of Sequences: 237096
Number of extensions: 2148545
Number of successful extensions: 10730
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 10220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10714
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10426655866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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