Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10h02
(832 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68011-3|CAA92014.2| 821|Caenorhabditis elegans Hypothetical pr... 31 0.77
AF162673-1|AAF80461.1| 568|Caenorhabditis elegans CNT-like nucl... 31 1.0
AF016413-5|AAB65255.1| 568|Caenorhabditis elegans Hypothetical ... 31 1.0
AF162674-1|AAF80462.1| 575|Caenorhabditis elegans CNT-like nucl... 29 4.1
AF016413-4|AAM29683.1| 454|Caenorhabditis elegans Hypothetical ... 29 4.1
AF016413-3|AAB65256.3| 555|Caenorhabditis elegans Hypothetical ... 29 4.1
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr... 28 7.1
U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase... 28 7.1
U10333-1|AAA50224.1| 859|Caenorhabditis elegans RNA polymerase ... 28 7.1
Z73422-5|CAE54882.1| 323|Caenorhabditis elegans Hypothetical pr... 28 9.4
Z73422-4|CAA97770.1| 319|Caenorhabditis elegans Hypothetical pr... 28 9.4
Z68270-9|CAE54911.1| 307|Caenorhabditis elegans Hypothetical pr... 28 9.4
Z68270-8|CAC35869.1| 309|Caenorhabditis elegans Hypothetical pr... 28 9.4
Z68270-7|CAA92571.2| 109|Caenorhabditis elegans Hypothetical pr... 28 9.4
U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical pr... 28 9.4
U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical p... 28 9.4
U23176-4|AAC46716.1| 632|Caenorhabditis elegans Fem-3 mrna bind... 28 9.4
L37867-1|AAA63155.1| 319|Caenorhabditis elegans homeodomain pro... 28 9.4
AL021567-3|CAA16509.2| 650|Caenorhabditis elegans Hypothetical ... 28 9.4
AF202930-1|AAK69380.1| 109|Caenorhabditis elegans Ny protein. 28 9.4
AC006656-6|AAF39879.1| 614|Caenorhabditis elegans Fem-3 mrna bi... 28 9.4
>Z68011-3|CAA92014.2| 821|Caenorhabditis elegans Hypothetical
protein T21B6.3 protein.
Length = 821
Score = 31.5 bits (68), Expect = 0.77
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 512 EQRQVKQHSNQRPPQHRPHEHSRPVLTPPR 601
+Q+Q +Q QRPPQ +P +P PP+
Sbjct: 249 QQQQQQQQQQQRPPQPQPQPQPQPPQRPPQ 278
>AF162673-1|AAF80461.1| 568|Caenorhabditis elegans CNT-like
nucleoside transporter protein.
Length = 568
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +3
Query: 132 GLAPGCSAHASSTLVTSRPAGLAASFPSIAALSSFPSFPIILQLSRTQYTCF 287
GLAPG AS ++ + AG A F + S P++ + + TCF
Sbjct: 513 GLAPGRKTVASKVMLRALCAGAIACFMNATVAGILISDPVVCNSANSNSTCF 564
>AF016413-5|AAB65255.1| 568|Caenorhabditis elegans Hypothetical
protein F27E11.1 protein.
Length = 568
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +3
Query: 132 GLAPGCSAHASSTLVTSRPAGLAASFPSIAALSSFPSFPIILQLSRTQYTCF 287
GLAPG AS ++ + AG A F + S P++ + + TCF
Sbjct: 513 GLAPGRKTVASKVMLRALCAGAIACFMNATVAGILISDPVVCNSANSNSTCF 564
>AF162674-1|AAF80462.1| 575|Caenorhabditis elegans CNT-like
nucleoside transporter protein.
Length = 575
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +3
Query: 132 GLAPGCSAHASSTLVTSRPAGLAASFPSIAALSSFPSFPIILQLSRTQYTCF 287
GLAP + S ++ + AG A F + S P+I Q S+ TCF
Sbjct: 519 GLAPSKRSTISKLVLRALCAGSIACFMNATVAGILISSPVICQSSQKSDTCF 570
>AF016413-4|AAM29683.1| 454|Caenorhabditis elegans Hypothetical
protein F27E11.2b protein.
Length = 454
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +3
Query: 132 GLAPGCSAHASSTLVTSRPAGLAASFPSIAALSSFPSFPIILQLSRTQYTCF 287
GLAP + S ++ + AG A F + S P+I Q S+ TCF
Sbjct: 398 GLAPSKRSTISKLVLRALCAGSIACFMNATVAGILISSPVICQSSQKSDTCF 449
>AF016413-3|AAB65256.3| 555|Caenorhabditis elegans Hypothetical
protein F27E11.2a protein.
Length = 555
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +3
Query: 132 GLAPGCSAHASSTLVTSRPAGLAASFPSIAALSSFPSFPIILQLSRTQYTCF 287
GLAP + S ++ + AG A F + S P+I Q S+ TCF
Sbjct: 499 GLAPSKRSTISKLVLRALCAGSIACFMNATVAGILISSPVICQSSQKSDTCF 550
>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical
protein F36F2.3a protein.
Length = 1128
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 117 QATSSGLAPGCSAHASSTLVTSRPAGLAASFPSIAALSSFPSFPIILQL 263
Q T SG++PG + T +TS +G + S S P P+ Q+
Sbjct: 343 QITPSGISPGSTLVQQQTTLTSVSSGTSLSAQPSNVNPSIPGIPLASQV 391
>U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase ii
(b) subunit protein2 protein.
Length = 1193
Score = 28.3 bits (60), Expect = 7.1
Identities = 19/68 (27%), Positives = 28/68 (41%)
Frame = +2
Query: 20 RDDSPXXAARGATGGHVVEQHRLPVVAASEYIPGHVLGTSAGLLGARLQHLGDVTPGRSG 199
++D P A G T ++ H +P S GH++ G L A +GD TP
Sbjct: 957 QEDMPF-TAEGLTPDIIINPHAVP----SRMTIGHLIECLQGKLSANKGEIGDATPFNDT 1011
Query: 200 SQLPKYRG 223
+ K G
Sbjct: 1012 VNVQKISG 1019
>U10333-1|AAA50224.1| 859|Caenorhabditis elegans RNA polymerase II,
second largestsubunit protein.
Length = 859
Score = 28.3 bits (60), Expect = 7.1
Identities = 19/68 (27%), Positives = 28/68 (41%)
Frame = +2
Query: 20 RDDSPXXAARGATGGHVVEQHRLPVVAASEYIPGHVLGTSAGLLGARLQHLGDVTPGRSG 199
++D P A G T ++ H +P S GH++ G L A +GD TP
Sbjct: 758 QEDMPF-TAEGLTPDIIINPHAVP----SRMTIGHLIECLQGKLSANKGEIGDATPFNDT 812
Query: 200 SQLPKYRG 223
+ K G
Sbjct: 813 VNVQKISG 820
>Z73422-5|CAE54882.1| 323|Caenorhabditis elegans Hypothetical
protein B0564.10b protein.
Length = 323
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +2
Query: 536 SNQRPPQHRPHEHSRPVLTPPRDIRIAAP-TTVLRRTVDRQLDVEHLPSSVP 688
S+ P H P+ + + PP DI P +L V ++ D HL +S P
Sbjct: 44 SSLAPLTHNPYAFNYSIPLPPTDITTKLPKLELLSLDVKQEQDDNHLDTSSP 95
>Z73422-4|CAA97770.1| 319|Caenorhabditis elegans Hypothetical
protein B0564.10a protein.
Length = 319
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +2
Query: 536 SNQRPPQHRPHEHSRPVLTPPRDIRIAAP-TTVLRRTVDRQLDVEHLPSSVP 688
S+ P H P+ + + PP DI P +L V ++ D HL +S P
Sbjct: 44 SSLAPLTHNPYAFNYSIPLPPTDITTKLPKLELLSLDVKQEQDDNHLDTSSP 95
>Z68270-9|CAE54911.1| 307|Caenorhabditis elegans Hypothetical
protein ZC410.7c protein.
Length = 307
Score = 27.9 bits (59), Expect = 9.4
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +2
Query: 548 PPQHRPHEHSRPV 586
PPQH P+EH++P+
Sbjct: 34 PPQHFPYEHTKPI 46
>Z68270-8|CAC35869.1| 309|Caenorhabditis elegans Hypothetical
protein ZC410.7b protein.
Length = 309
Score = 27.9 bits (59), Expect = 9.4
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +2
Query: 548 PPQHRPHEHSRPV 586
PPQH P+EH++P+
Sbjct: 34 PPQHFPYEHTKPI 46
>Z68270-7|CAA92571.2| 109|Caenorhabditis elegans Hypothetical
protein ZC410.7a protein.
Length = 109
Score = 27.9 bits (59), Expect = 9.4
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +2
Query: 548 PPQHRPHEHSRPV 586
PPQH P+EH++P+
Sbjct: 34 PPQHFPYEHTKPI 46
>U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical protein
C37C3.6b protein.
Length = 2167
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +2
Query: 542 QRPPQHRPHEHSRPVLTPPRDIRIAAPTTVLRRTVDRQLDVEHLPSSVP 688
+R P HR SRP+LTP ++ + P T TV + P S P
Sbjct: 2069 KRLPGHRTT--SRPMLTPSKNFSLGTPPTPSPSTVSTTPFRIYTPGSAP 2115
>U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical
protein C56C10.12 protein.
Length = 1599
Score = 27.9 bits (59), Expect = 9.4
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = +3
Query: 54 PPAGM*SNSTAFLL*PHLNIFQATSSGLAPGCSAHASSTLVTSRPAGLAASFPSIAALSS 233
PP + A + P IF ++S +A S S+T V + + AS+P++ L+
Sbjct: 90 PPPRVSQEREAPPIPPRSMIFPRSTSMVAE--SRKESTTAVAPKRSVAVASYPAVPELAE 147
Query: 234 FPSFPIILQ 260
PS+ LQ
Sbjct: 148 LPSYTDALQ 156
>U23176-4|AAC46716.1| 632|Caenorhabditis elegans Fem-3 mrna binding
factor protein 2 protein.
Length = 632
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = +3
Query: 156 HASSTLVTSRPAGLAASFPSIAALSSFPSFPIILQLSRTQYTCFLSAASSIS 311
H + +VTSRP S+ + SFP+ + + +SR++ + F+ + + S
Sbjct: 66 HQQNHIVTSRPPTPLTDLMSLRSFQSFPN--VFMPVSRSRTSSFIQSDTDSS 115
>L37867-1|AAA63155.1| 319|Caenorhabditis elegans homeodomain
protein protein.
Length = 319
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +2
Query: 536 SNQRPPQHRPHEHSRPVLTPPRDIRIAAP-TTVLRRTVDRQLDVEHLPSSVP 688
S+ P H P+ + + PP DI P +L V ++ D HL +S P
Sbjct: 44 SSLAPLTHNPYAFNYSIPLPPTDITTKLPKLELLSLDVKQEQDDNHLDTSSP 95
>AL021567-3|CAA16509.2| 650|Caenorhabditis elegans Hypothetical
protein F21A10.4 protein.
Length = 650
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = -3
Query: 785 IYQHAIGLEIKRQKRRAKEIFNISVLIFRD*V---KEPNSA 672
+ +H I LEIK QKR+ IF ++I + V K P A
Sbjct: 250 VVKHEIVLEIKMQKRKKPVIFKYPIIICNEEVAKHKRPREA 290
>AF202930-1|AAK69380.1| 109|Caenorhabditis elegans Ny protein.
Length = 109
Score = 27.9 bits (59), Expect = 9.4
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +2
Query: 548 PPQHRPHEHSRPV 586
PPQH P+EH++P+
Sbjct: 34 PPQHFPYEHTKPI 46
>AC006656-6|AAF39879.1| 614|Caenorhabditis elegans Fem-3 mrna
binding factor protein 1 protein.
Length = 614
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = +3
Query: 156 HASSTLVTSRPAGLAASFPSIAALSSFPSFPIILQLSRTQYTCFLSAASSIS 311
H + +VTSRP S+ + SFP+ + + +SR++ + F+ + + S
Sbjct: 66 HQQNHIVTSRPPTPLTDLMSLRSFQSFPN--VFMPVSRSRTSSFIQSDTDSS 115
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,067,432
Number of Sequences: 27780
Number of extensions: 306993
Number of successful extensions: 1108
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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