Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10h01
         (819 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    27   0.21 
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   5.9  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   5.9  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   7.8  

>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
           protein.
          Length = 85

 Score = 27.1 bits (57), Expect = 0.21
 Identities = 18/49 (36%), Positives = 28/49 (57%)
 Frame = +3

Query: 312 CSRSRTNSLMISAIVGLERTLQYIKKSSLLIALRAVLVAGNVLVPRAAE 458
           CS +  N L++S IVG   T+  +  SSL+I +   L+  N+L   +AE
Sbjct: 1   CSSTEANELVMSVIVG---TVVIV--SSLIILISYALILFNILHMSSAE 44


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 26  FRLRRQDLNYGSFIGTREAILG 91
           +RLR +D+N  +FI      LG
Sbjct: 177 YRLRAEDINMNTFIANIAVDLG 198


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -3

Query: 601 IGCGSKRITCNPENPPC 551
           IGC +++  C+  + PC
Sbjct: 91  IGCSAEKFECSKTSNPC 107


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 212 SSDASENNINRRNGRKVYAL 153
           SS  +EN+  RR GR+V+A+
Sbjct: 196 SSMTNENSEFRRMGREVFAV 215


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,924
Number of Sequences: 438
Number of extensions: 4686
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)