Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10g24
         (791 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0674 - 21745321-21746223,21746229-21747608                       28   9.8  
10_08_0607 + 19168164-19168358,19168594-19168716,19168791-191689...    28   9.8  
10_01_0113 + 1410151-1411416                                           28   9.8  
02_01_0210 + 1402037-1402066,1402449-1402544,1402611-1403033,140...    28   9.8  
02_01_0177 + 1214226-1214294,1214707-1214794,1216095-1216308,121...    28   9.8  
01_01_0018 + 139150-140415                                             28   9.8  

>12_02_0674 - 21745321-21746223,21746229-21747608
          Length = 760

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -1

Query: 218 P*IPLRSTISTSVC-CPTTQVTCQAASSDSEKPTATTRETLSVGSEETS 75
           P  P  S +S+S    P+T  TC+ +++  + P+ T    LS  + +TS
Sbjct: 541 PSTPRTSLLSSSTSKIPSTPSTCELSTATGKIPSTTCTSPLSTATGKTS 589


>10_08_0607 +
           19168164-19168358,19168594-19168716,19168791-19168946,
           19169129-19169314,19169467-19169583,19169721-19169774,
           19169854-19169925,19170430-19170535,19170658-19170754,
           19171090-19171184,19172318-19172420,19172699-19172886,
           19174928-19175183,19177187-19177325
          Length = 628

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = -2

Query: 691 IRPKIFFFEIYNGSGFSQYRPTALYSWVHGSLSRVQVSDRRYVWLDNTQDPSRSERAA 518
           + P +F   +Y G       P+   S    S  R Q++    +WL   Q+P+ S R +
Sbjct: 383 VYPDVFMTNLYYGGTRIAGDPSNCSSPAAVSTVRKQIASHISLWLSQCQEPTSSRRTS 440


>10_01_0113 + 1410151-1411416
          Length = 421

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = -3

Query: 234 PDPPLSINPTEIYHKHVGMLPNYAGH---VPGCVFRFGKTYGNDTRDAKRWLR 85
           PD P  +  T    KHVG+   Y G+   V   V R G   G D  +A R +R
Sbjct: 266 PDAPTVLAITVNSRKHVGVKDGYYGNCATVHMAVARSGAVAGGDMTEAVRAIR 318


>02_01_0210 +
           1402037-1402066,1402449-1402544,1402611-1403033,
           1403126-1403215,1403330-1403401,1403851-1403980,
           1404172-1404269
          Length = 312

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 43  IYDVNSFLLRCEVSSEPTLSVSRVVA 120
           + DVN  + RC  S+ PT SVS+ +A
Sbjct: 147 LQDVNDAMSRCAASTAPTTSVSQKLA 172


>02_01_0177 +
           1214226-1214294,1214707-1214794,1216095-1216308,
           1216413-1216738,1216860-1217013,1217377-1217438,
           1218078-1218133,1219456-1221279,1221775-1222698,
           1222855-1222866
          Length = 1242

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 7/88 (7%)
 Frame = -3

Query: 456 QNEIDIVNARF---RNGDPVYKHPMIPGYEGFSGHVPYGFQ-RFGESSKKLTN---SALC 298
           + EI+I++  F    NG PV  +PM   ++   G    G   + G  SK L     +AL 
Sbjct: 149 EEEINILDENFGAKSNGVPVI-YPMNGHFQNGHGVASNGLDGKAGFVSKSLEGRAVAALN 207

Query: 297 DFSSNYRRRQSTEWAPVNVVKPDPPLSI 214
            F  N +      W    +  PDPP  +
Sbjct: 208 KFGQNAKMTSDPMWMKKALPPPDPPAMV 235


>01_01_0018 + 139150-140415
          Length = 421

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
 Frame = -1

Query: 650 WI*SVSPNRIIFLGTRV---IVPSTSIGSAIRMARQHTRSFSIRACS-IQRGWCYPIERP 483
           W  + S NR I L T +   I  + S    + +   H        CS +    C  +++P
Sbjct: 86  WASAQSHNRCIILDTDIAEAIASTESYDFLVDILHNHREKHKSTPCSTLTTKRCRLVDQP 145

Query: 482 MTSRSTVQHRTR*TS*THVSVMAIPFT 402
            TSR   QH+    + T+    AIP T
Sbjct: 146 STSRPPYQHQLPLFAPTYTP--AIPIT 170


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,275,946
Number of Sequences: 37544
Number of extensions: 504809
Number of successful extensions: 1284
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1284
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)