Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10g24
(791 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92828-5|CAB07332.2| 586|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z72504-4|CAH60755.1| 653|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 29 2.9
X91045-1|CAA62505.1| 693|Caenorhabditis elegans let-653 protein. 29 2.9
U41538-1|AAG00009.2| 118|Caenorhabditis elegans Hypothetical pr... 29 2.9
AF468834-1|AAL77082.1| 586|Caenorhabditis elegans PRY-1 protein. 29 2.9
Z81565-3|CAH60773.1| 489|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z81565-2|CAB04581.1| 507|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z68108-14|CAA92133.3| 2066|Caenorhabditis elegans Hypothetical p... 28 8.8
Z68108-13|CAF31493.1| 2048|Caenorhabditis elegans Hypothetical p... 28 8.8
Z68108-12|CAF31492.1| 2101|Caenorhabditis elegans Hypothetical p... 28 8.8
Z68108-11|CAF31491.1| 2134|Caenorhabditis elegans Hypothetical p... 28 8.8
Z68108-10|CAF31490.1| 1888|Caenorhabditis elegans Hypothetical p... 28 8.8
Z68108-9|CAF31489.1| 1927|Caenorhabditis elegans Hypothetical pr... 28 8.8
Z68108-8|CAF31488.1| 1509|Caenorhabditis elegans Hypothetical pr... 28 8.8
Z68108-7|CAF31487.1| 1692|Caenorhabditis elegans Hypothetical pr... 28 8.8
Z68108-5|CAD44152.2| 725|Caenorhabditis elegans Hypothetical pr... 28 8.8
AY390537-1|AAQ94949.1| 692|Caenorhabditis elegans SMA-9 class B... 28 8.8
AY389809-1|AAR28681.1| 909|Caenorhabditis elegans zinc finger t... 28 8.8
AF043704-2|AAX88816.1| 407|Caenorhabditis elegans Prion-like-(q... 28 8.8
>Z92828-5|CAB07332.2| 586|Caenorhabditis elegans Hypothetical
protein C37A5.9 protein.
Length = 586
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 194 ISTSVCCPTTQVTCQAASSDSEKPTATTRETLSVGSEETS 75
+S S+C P+ + S DS P TTR + GS ++S
Sbjct: 420 MSQSMCAPSYSSASSSYSRDSFAPAPTTRVNFAPGSSKSS 459
>Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical
protein C29E6.1a protein.
Length = 812
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -1
Query: 200 STISTSVCCPTTQVTCQAASSDSEKPTATTRETLSVGSEETSHLRRKEFT 51
+T+ TS PTT A ++ + KPT T ET + S T+ +K T
Sbjct: 498 TTVQTSTTVPTTPSKTTATTTTTPKPTTT--ETATTSSSTTTVTTQKPTT 545
>Z72504-4|CAH60755.1| 653|Caenorhabditis elegans Hypothetical
protein C29E6.1b protein.
Length = 653
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -1
Query: 200 STISTSVCCPTTQVTCQAASSDSEKPTATTRETLSVGSEETSHLRRKEFT 51
+T+ TS PTT A ++ + KPT T ET + S T+ +K T
Sbjct: 339 TTVQTSTTVPTTPSKTTATTTTTPKPTTT--ETATTSSSTTTVTTQKPTT 386
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/51 (27%), Positives = 29/51 (56%)
Frame = -1
Query: 200 STISTSVCCPTTQVTCQAASSDSEKPTATTRETLSVGSEETSHLRRKEFTS 48
ST++TS P+T T ++SS + TA++ + + S ++S ++ T+
Sbjct: 487 STVTTSTTAPSTSTTGPSSSSSTPSSTASSSVSSTASSTQSSTSTQQSSTT 537
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/51 (27%), Positives = 29/51 (56%)
Frame = -1
Query: 200 STISTSVCCPTTQVTCQAASSDSEKPTATTRETLSVGSEETSHLRRKEFTS 48
ST++TS P+T T ++SS + TA++ + + S ++S ++ T+
Sbjct: 487 STVTTSTTAPSTSTTGPSSSSSTPSSTASSSVSSTASSTQSSTSTQQSSTT 537
>X91045-1|CAA62505.1| 693|Caenorhabditis elegans let-653 protein.
Length = 693
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -1
Query: 200 STISTSVCCPTTQVTCQAASSDSEKPTATTRETLSVGSEETSHLRRKEFT 51
+T+ TS PTT A ++ + KPT T ET + S T+ +K T
Sbjct: 379 TTVQTSTTVPTTPSKTTATTTTTPKPTTT--ETATTSSSTTTVTTQKPTT 426
>U41538-1|AAG00009.2| 118|Caenorhabditis elegans Hypothetical
protein R04E5.7 protein.
Length = 118
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3
Query: 537 LDPSVQHSERLVLSDRTADDFQIYRPAQNEIDIVNAR 427
++ VQ++ERL L +T F + AQNE D N +
Sbjct: 73 INVQVQNNERLDLDPKTCSQFSLPEVAQNEGDTFNVQ 109
>AF468834-1|AAL77082.1| 586|Caenorhabditis elegans PRY-1 protein.
Length = 586
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 194 ISTSVCCPTTQVTCQAASSDSEKPTATTRETLSVGSEETS 75
+S S+C P+ + S DS P TTR + GS ++S
Sbjct: 420 MSQSMCAPSYSSASSSYSRDSFAPAPTTRVNFAPGSSKSS 459
>Z81565-3|CAH60773.1| 489|Caenorhabditis elegans Hypothetical
protein K06G5.1b protein.
Length = 489
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/57 (22%), Positives = 25/57 (43%)
Frame = -2
Query: 670 FEIYNGSGFSQYRPTALYSWVHGSLSRVQVSDRRYVWLDNTQDPSRSERAAFREAGA 500
F +YNG ++ ++ S +Y++++ TQD + S A + GA
Sbjct: 87 FTLYNGKVADNSTKITTFTVADSGTTKSYTSSTQYIYVEYTQDNATSPNAYYGSIGA 143
>Z81565-2|CAB04581.1| 507|Caenorhabditis elegans Hypothetical
protein K06G5.1a protein.
Length = 507
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/57 (22%), Positives = 25/57 (43%)
Frame = -2
Query: 670 FEIYNGSGFSQYRPTALYSWVHGSLSRVQVSDRRYVWLDNTQDPSRSERAAFREAGA 500
F +YNG ++ ++ S +Y++++ TQD + S A + GA
Sbjct: 87 FTLYNGKVADNSTKITTFTVADSGTTKSYTSSTQYIYVEYTQDNATSPNAYYGSIGA 143
>Z68108-14|CAA92133.3| 2066|Caenorhabditis elegans Hypothetical
protein T05A10.1a protein.
Length = 2066
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/52 (28%), Positives = 21/52 (40%)
Frame = -3
Query: 693 LFGQKYFFLKFTMALDLVSIAQPHYIPGYTGHCPEYKYRIGDTYGSTTHKIL 538
L G K+F T L+ Q H P YT C K + G H+++
Sbjct: 446 LSGSKHFMGSLTSGQPLLRPIQAHNDPNYTPECIYCKLTFPNEAGLQAHEVV 497
>Z68108-13|CAF31493.1| 2048|Caenorhabditis elegans Hypothetical
protein T05A10.1f protein.
Length = 2048
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/52 (28%), Positives = 21/52 (40%)
Frame = -3
Query: 693 LFGQKYFFLKFTMALDLVSIAQPHYIPGYTGHCPEYKYRIGDTYGSTTHKIL 538
L G K+F T L+ Q H P YT C K + G H+++
Sbjct: 514 LSGSKHFMGSLTSGQPLLRPIQAHNDPNYTPECIYCKLTFPNEAGLQAHEVV 565
>Z68108-12|CAF31492.1| 2101|Caenorhabditis elegans Hypothetical
protein T05A10.1e protein.
Length = 2101
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/52 (28%), Positives = 21/52 (40%)
Frame = -3
Query: 693 LFGQKYFFLKFTMALDLVSIAQPHYIPGYTGHCPEYKYRIGDTYGSTTHKIL 538
L G K+F T L+ Q H P YT C K + G H+++
Sbjct: 514 LSGSKHFMGSLTSGQPLLRPIQAHNDPNYTPECIYCKLTFPNEAGLQAHEVV 565
>Z68108-11|CAF31491.1| 2134|Caenorhabditis elegans Hypothetical
protein T05A10.1d protein.
Length = 2134
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/52 (28%), Positives = 21/52 (40%)
Frame = -3
Query: 693 LFGQKYFFLKFTMALDLVSIAQPHYIPGYTGHCPEYKYRIGDTYGSTTHKIL 538
L G K+F T L+ Q H P YT C K + G H+++
Sbjct: 514 LSGSKHFMGSLTSGQPLLRPIQAHNDPNYTPECIYCKLTFPNEAGLQAHEVV 565
>Z68108-10|CAF31490.1| 1888|Caenorhabditis elegans Hypothetical
protein T05A10.1g protein.
Length = 1888
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/52 (28%), Positives = 21/52 (40%)
Frame = -3
Query: 693 LFGQKYFFLKFTMALDLVSIAQPHYIPGYTGHCPEYKYRIGDTYGSTTHKIL 538
L G K+F T L+ Q H P YT C K + G H+++
Sbjct: 514 LSGSKHFMGSLTSGQPLLRPIQAHNDPNYTPECIYCKLTFPNEAGLQAHEVV 565
>Z68108-9|CAF31489.1| 1927|Caenorhabditis elegans Hypothetical
protein T05A10.1i protein.
Length = 1927
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/52 (28%), Positives = 21/52 (40%)
Frame = -3
Query: 693 LFGQKYFFLKFTMALDLVSIAQPHYIPGYTGHCPEYKYRIGDTYGSTTHKIL 538
L G K+F T L+ Q H P YT C K + G H+++
Sbjct: 514 LSGSKHFMGSLTSGQPLLRPIQAHNDPNYTPECIYCKLTFPNEAGLQAHEVV 565
>Z68108-8|CAF31488.1| 1509|Caenorhabditis elegans Hypothetical
protein T05A10.1j protein.
Length = 1509
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/52 (28%), Positives = 21/52 (40%)
Frame = -3
Query: 693 LFGQKYFFLKFTMALDLVSIAQPHYIPGYTGHCPEYKYRIGDTYGSTTHKIL 538
L G K+F T L+ Q H P YT C K + G H+++
Sbjct: 514 LSGSKHFMGSLTSGQPLLRPIQAHNDPNYTPECIYCKLTFPNEAGLQAHEVV 565
>Z68108-7|CAF31487.1| 1692|Caenorhabditis elegans Hypothetical
protein T05A10.1c protein.
Length = 1692
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/52 (28%), Positives = 21/52 (40%)
Frame = -3
Query: 693 LFGQKYFFLKFTMALDLVSIAQPHYIPGYTGHCPEYKYRIGDTYGSTTHKIL 538
L G K+F T L+ Q H P YT C K + G H+++
Sbjct: 72 LSGSKHFMGSLTSGQPLLRPIQAHNDPNYTPECIYCKLTFPNEAGLQAHEVV 123
>Z68108-5|CAD44152.2| 725|Caenorhabditis elegans Hypothetical
protein T05A10.1b protein.
Length = 725
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/52 (28%), Positives = 21/52 (40%)
Frame = -3
Query: 693 LFGQKYFFLKFTMALDLVSIAQPHYIPGYTGHCPEYKYRIGDTYGSTTHKIL 538
L G K+F T L+ Q H P YT C K + G H+++
Sbjct: 537 LSGSKHFMGSLTSGQPLLRPIQAHNDPNYTPECIYCKLTFPNEAGLQAHEVV 588
>AY390537-1|AAQ94949.1| 692|Caenorhabditis elegans SMA-9 class B
protein.
Length = 692
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/52 (28%), Positives = 21/52 (40%)
Frame = -3
Query: 693 LFGQKYFFLKFTMALDLVSIAQPHYIPGYTGHCPEYKYRIGDTYGSTTHKIL 538
L G K+F T L+ Q H P YT C K + G H+++
Sbjct: 537 LSGSKHFMGSLTSGQPLLRPIQAHNDPNYTPECIYCKLTFPNEAGLQAHEVV 588
>AY389809-1|AAR28681.1| 909|Caenorhabditis elegans zinc finger
transcription factorSMA-9 protein.
Length = 909
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/52 (28%), Positives = 21/52 (40%)
Frame = -3
Query: 693 LFGQKYFFLKFTMALDLVSIAQPHYIPGYTGHCPEYKYRIGDTYGSTTHKIL 538
L G K+F T L+ Q H P YT C K + G H+++
Sbjct: 446 LSGSKHFMGSLTSGQPLLRPIQAHNDPNYTPECIYCKLTFPNEAGLQAHEVV 497
>AF043704-2|AAX88816.1| 407|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 72
protein.
Length = 407
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -1
Query: 173 PTTQVTCQAASSDSEKPTATTRETLSVGSEETSHLRRKEF 54
P T T + ++ SE+PT T T + ++ T L +EF
Sbjct: 266 PITTTTAETTTTTSEEPTVTEETTTELVTDVTIALPDEEF 305
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,238,323
Number of Sequences: 27780
Number of extensions: 440129
Number of successful extensions: 1374
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1373
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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