Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10g19
(863 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 32 0.12
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi... 29 0.85
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 29 0.85
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran... 28 1.5
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 27 2.6
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 27 2.6
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma... 27 2.6
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 27 3.4
SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb... 27 4.5
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ... 27 4.5
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 27 4.5
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 26 6.0
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 26 6.0
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 26 6.0
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 26 6.0
SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|... 26 6.0
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 26 6.0
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 26 6.0
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 26 6.0
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 26 7.9
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch... 26 7.9
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 7.9
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi... 26 7.9
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 31.9 bits (69), Expect = 0.12
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Frame = -2
Query: 553 EKFGKDSNEDEDKVESVDETYENPYIVDKSQLEE--IERKLEPLMSKNKRNSVASPNLIG 380
E F K ++ +K +S+ ETYE K +LEE +E ++ +R+ +A+ N
Sbjct: 51 EAFRKTVDDMYEKQKSIRETYEKDINKLKRELEELGVEANTASYRNRGERSELAASNNQV 110
Query: 379 HESDPKRPWRTNSNKE 332
D + P +T S +
Sbjct: 111 THIDQEHPSQTKSTSQ 126
>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 965
Score = 29.1 bits (62), Expect = 0.85
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Frame = -2
Query: 706 FINNTKPDIIEQFSKMMTDEEKS--KIAKLLHDVAVKENQLPERCSGLVKDIREKFGKDS 533
FI+N +P + K + K+ K+ + VK +R REK K S
Sbjct: 785 FISNVRPKLFAYPPKSVQPTAKTVQKVETAVLSTTVKAQARAKRAE------REKASKGS 838
Query: 532 NEDEDKVE--SVDETYENPYIVDKSQLEEI 449
N+DE K++ + +E P +D+ + ++I
Sbjct: 839 NDDEMKIDKKTTEEKEATPMEMDEEKSQDI 868
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 29.1 bits (62), Expect = 0.85
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Frame = -2
Query: 604 KENQLPERCSGLVKDIREKFGKDSNEDEDKVESVDETYENPYIV-----DKSQLEEIERK 440
KE++ + L KD+ EK K +NED K E+ + E I +K+ +E E K
Sbjct: 424 KESKDENNKASLHKDVEEKDTKITNEDTGKTETDVKAKETDSIEANDKDEKTDSKETEDK 483
Query: 439 LEPLMSK 419
+E SK
Sbjct: 484 VEETESK 490
>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
transcription factor Ams2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 697
Score = 28.3 bits (60), Expect = 1.5
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = -2
Query: 409 NSVASPNLIGHESDPKRPWRTNSNKEKLL--RIDNELKRHLDKATDLIAPLS 260
+SVA N I E+ P+ P R + + E L ++DNE +R + TDL+ P S
Sbjct: 632 SSVAKSNNI--ENSPQLPERYDFSLELGLNSQLDNEERRDIPLMTDLVMPSS 681
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 27.5 bits (58), Expect = 2.6
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 2/111 (1%)
Frame = -2
Query: 700 NNTKPDIIEQFSKMMTDEEKSKIAKLLHDVAVKENQLPERCSGLVKDIRE--KFGKDSNE 527
NNTK D ++ + K+ I K L ++ N P ++++ K K+SN
Sbjct: 110 NNTKAD-----AEACLLKSKNYIKKSLQEIVYLTNMQPNVSWNVLQEPTRGIKVPKESNN 164
Query: 526 DEDKVESVDETYENPYIVDKSQLEEIERKLEPLMSKNKRNSVASPNLIGHE 374
+ + V E +N V+ + E+E M+K + + S +L+ E
Sbjct: 165 TQQNNQFVMEPSQNKGNVNDANFFEVEYARNENMNKLSSSELISDDLLEDE 215
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 366 LSGHGEPTPIKKNCSGSTTS*NDTWTKLQT 277
LSG+ +PTP++KN TS D QT
Sbjct: 186 LSGYTQPTPVQKNSIPIVTSGRDLMACAQT 215
>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 835
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = -2
Query: 403 VASPNLIGHESDPKRPWRTNSNKEKL--LRIDNELKRHL 293
V +PN++ ++P RP+ TN+ E+L L + + L R++
Sbjct: 558 VQNPNILPSSTNPTRPFTTNTLDEELDMLMVCHHLSRNV 596
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 27.1 bits (57), Expect = 3.4
Identities = 40/210 (19%), Positives = 88/210 (41%), Gaps = 3/210 (1%)
Frame = -2
Query: 685 DIIEQFSKMMTDE--EKSKIAKLLHDVAVKENQLPERCSGLVKDIREKFGKDSNEDEDKV 512
D I Q S+ D+ E ++ K L + + N+ E + ++ E+ K + + D +
Sbjct: 606 DEITQLSERYNDKCHEFDELQKRLQTLEEENNKAKEDSTSKTSNLLEQL-KMTEAEVDSL 664
Query: 511 ESVDETYENPYIVDKSQLEEIERKLEPLMSKNKRNSVASPNLIGHESDPKRPWRTNSNKE 332
+E EN ++ + E ++ L+ + S+ + L +++ + ++KE
Sbjct: 665 RKENE--ENKQVIALKESELVKSNDNKLLLNEQIESL-NDQLSQLKTEMES---VTTSKE 718
Query: 331 KLLRIDNELK-RHLDKATDLIAPLSDGEMSDIIKQSREESITTRPVEYVRLVDTVEEAKK 155
L + LK RH D+ L L + E S + I R +YV L + + +
Sbjct: 719 SLADYLSNLKERHNDELDSLNKKLREFEGILSSNSSLKSEIEERNNQYVTLRENFDSLQN 778
Query: 154 TLFNFQYRAVCNSTATAILREAHAPVDQNE 65
+ + V + + ++++ D+N+
Sbjct: 779 AIMETFDKQVTHCSVNHLVQQIRKLKDENK 808
>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 386
Score = 26.6 bits (56), Expect = 4.5
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -2
Query: 520 DKVESVDETYENPYIVDKSQLEEIERKLEPLMSKN 416
+K ESVD ENP + + I+ +L +MSK+
Sbjct: 13 EKKESVDVKRENPSFTNSIKALPIQSELSAMMSKD 47
>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
Length = 347
Score = 26.6 bits (56), Expect = 4.5
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Frame = -2
Query: 553 EKFGKDSNEDEDKVESVDETYENPYIVDKSQLEEIERKLEPLMSK---NKRNSVAS---P 392
EK K+ +D+D E ++T +N + K++++ + PL + +++A P
Sbjct: 186 EKEEKEGKDDKDDKEDSNDT-KNDKKISKNEVDSSLIEASPLTGQVPPKFLDTIAIFPLP 244
Query: 391 NLIGHESDPKRPWRTNSNKE 332
NL+G + PKR R +E
Sbjct: 245 NLLGFSNTPKRLSRFFKRRE 264
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 26.6 bits (56), Expect = 4.5
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +1
Query: 439 VSFLFLQVVIYQLCMDFHTFRQRIRL 516
V L ++++++CM F T +RIR+
Sbjct: 844 VDMYSLGIILFEMCMTFSTSMERIRI 869
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 26.2 bits (55), Expect = 6.0
Identities = 19/78 (24%), Positives = 31/78 (39%)
Frame = -2
Query: 664 KMMTDEEKSKIAKLLHDVAVKENQLPERCSGLVKDIREKFGKDSNEDEDKVESVDETYEN 485
K + DE K + + E E S + I+E NE++ K S YE+
Sbjct: 501 KKLQDENSEKTETIAQLEQIIEELHEELRSLEEESIKESSATQQNENQHKRSSRKLLYED 560
Query: 484 PYIVDKSQLEEIERKLEP 431
+ ++ +RKL P
Sbjct: 561 KQAIQEAHTINTKRKLWP 578
>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 26.2 bits (55), Expect = 6.0
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = -2
Query: 529 EDEDKVESVDETYENPYIVDKSQLEEIERKLEPLMSKNKRNSVASPNLIGHESDPKR 359
+++ K + D+ E + DK+Q++EIE+ + + + SP L +P R
Sbjct: 272 KEKAKEKQKDKDQEQDTVSDKNQIDEIEKGQKEVDEEPVSEPTTSPILPPKNQEPIR 328
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 26.2 bits (55), Expect = 6.0
Identities = 14/61 (22%), Positives = 27/61 (44%)
Frame = -2
Query: 499 ETYENPYIVDKSQLEEIERKLEPLMSKNKRNSVASPNLIGHESDPKRPWRTNSNKEKLLR 320
ET P++ ++ R + ++KNKR A GH++ + W T ++ R
Sbjct: 20 ETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAE-SWGTGRALARIPR 78
Query: 319 I 317
+
Sbjct: 79 V 79
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 26.2 bits (55), Expect = 6.0
Identities = 14/61 (22%), Positives = 27/61 (44%)
Frame = -2
Query: 499 ETYENPYIVDKSQLEEIERKLEPLMSKNKRNSVASPNLIGHESDPKRPWRTNSNKEKLLR 320
ET P++ ++ R + ++KNKR A GH++ + W T ++ R
Sbjct: 20 ETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAE-SWGTGRALARIPR 78
Query: 319 I 317
+
Sbjct: 79 V 79
>SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 260
Score = 26.2 bits (55), Expect = 6.0
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = -2
Query: 541 KDSNEDE--DKVESVDETYENPYIVDKSQLEEIER 443
K SNE + V+ + EN YIVDK ++ E+++
Sbjct: 24 KHSNEKKYLKSVKGKNNENENSYIVDKKRMNELKK 58
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 26.2 bits (55), Expect = 6.0
Identities = 25/87 (28%), Positives = 36/87 (41%)
Frame = -2
Query: 700 NNTKPDIIEQFSKMMTDEEKSKIAKLLHDVAVKENQLPERCSGLVKDIREKFGKDSNEDE 521
N KPD+I K D S+ KL+ A E Q L+KD ++NE
Sbjct: 917 NGAKPDVIGASGKKPIDLSSSEPIKLVFKEANNE-QAQSISRSLIKDSEGSI--NTNETL 973
Query: 520 DKVESVDETYENPYIVDKSQLEEIERK 440
+ V+E E+ + KS E + K
Sbjct: 974 ESTSIVNEIEESA-VQTKSYSESMWNK 999
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 26.2 bits (55), Expect = 6.0
Identities = 44/202 (21%), Positives = 84/202 (41%), Gaps = 8/202 (3%)
Frame = -2
Query: 664 KMMTDEEKSK-IAKLL--HDVAVK--ENQLPERCSGLVKDIREKFGKDSNEDEDKVESVD 500
K + E +SK + +LL H A+ EN+L E + +I + + K S K++ +
Sbjct: 478 KSLRQEYESKNLLELLDKHQTALSSVENRLDE-----ISEIVDSYHKYSGV-RTKLQVFE 531
Query: 499 ETYENPYIVDKSQLEEIERKLEPLMSKN-KRNSVASPNLIGHESDPKRPWRTNSNKEKLL 323
E N + +QL ++ +MS K + + L D ++ + E L
Sbjct: 532 ENKTNKSAILANQLMTLKSSFSEVMSYELKDDDNYNEELDKLVEDVRKKLQEKEEAESSL 591
Query: 322 R-IDNELKRHLDKATDLIAPLSDGE-MSDIIKQSREESITTRPVEYVRLVDTVEEAKKTL 149
R + L+ + + I L++ + + +S + + E L +EE +KTL
Sbjct: 592 RSVRERLEIRISLSVQSINDLTENKKIKTKTLKSYSGTFASMISEIKALESEIEENRKTL 651
Query: 148 FNFQYRAVCNSTATAILREAHA 83
+ Q+ + A I + HA
Sbjct: 652 HSLQFGSTFYEKAIEICVDQHA 673
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 26.2 bits (55), Expect = 6.0
Identities = 34/172 (19%), Positives = 70/172 (40%), Gaps = 2/172 (1%)
Frame = -2
Query: 727 VTKATVYFINNTK--PDIIEQFSKMMTDEEKSKIAKLLHDVAVKENQLPERCSGLVKDIR 554
++K T +NN+ P + + ++ EE + DV+ +Q R S ++ D+
Sbjct: 808 ISKTTSLSVNNSSVNPSLDSEPVQLSNMEEPQHQDSSVVDVSTSASQ---RGSPVLSDLS 864
Query: 553 EKFGKDSNEDEDKVESVDETYENPYIVDKSQLEEIERKLEPLMSKNKRNSVASPNLIGHE 374
+ G N E + E EN ++ ++ EP+ + ++++P +
Sbjct: 865 KLTGSARNTAEPVENTSAEPIENTSAPTPFEIANKQQATEPISAPFATETISTPAPVKPP 924
Query: 373 SDPKRPWRTNSNKEKLLRIDNELKRHLDKATDLIAPLSDGEMSDIIKQSREE 218
P R R S ++ +++ + H+ D P+ E+ D S EE
Sbjct: 925 VPPSR--RDRSAQDGVVQ---QATPHIQ---DEFPPIQFNEIDDDESSSDEE 968
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1388
Score = 25.8 bits (54), Expect = 7.9
Identities = 28/137 (20%), Positives = 53/137 (38%), Gaps = 1/137 (0%)
Frame = -2
Query: 556 REKFGKDSNEDEDKVESVDETYENPYIVDKSQLEEIERKLEPLMSKNKRNSVASPNLIGH 377
R + GK + + K+ES T + + + K+E + R+ ASP +
Sbjct: 1228 RRQSGKPNVKSAQKIESATRTPSPAISESRKKPSSKDTKIETPSREQSRSQTASP--VKS 1285
Query: 376 ESDPKRPWRTNSNKEKLLRIDNELKRHLDKATDLIAPLSDGEMSDIIKQSREESITTRPV 197
E D K + + +++H+ + + L E+ ++ E +TT
Sbjct: 1286 EKDDGNVSLNAEQKARCKELMYPVRKHMKRLRKDSSGLGRAELVKLL----TECLTTIGK 1341
Query: 196 EYVRLV-DTVEEAKKTL 149
+ V DT E K T+
Sbjct: 1342 HIEKTVNDTPSEEKATV 1358
>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 611
Score = 25.8 bits (54), Expect = 7.9
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = -2
Query: 637 KIAKLLHDVAVKENQLPERCSGLVKDIREKFGKDSNEDEDKVESVDETY 491
K+ LLH++ VK+ LPE L+K + + E+K +S+ T+
Sbjct: 420 KLRLLLHELLVKKKALPELDKDLLKFVWVVDFPLFSPTEEKNQSITSTH 468
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 25.8 bits (54), Expect = 7.9
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = -2
Query: 652 DEEKSKIAKLLHDVAVKENQLPERCSGLVKDIREKFGKDSNEDEDKVESVDETYENPYIV 473
D K+ ++K H A E Q G ++ E+ D +EDED+ E D N +++
Sbjct: 178 DTSKNGLSKKQHSEAQPEVQ------GNDDEVEEEDDDDDDEDEDEDEDEDNNNNNRWLL 231
>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 25.8 bits (54), Expect = 7.9
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = +1
Query: 262 TKGRSGL*LCPSVVLARCRSGAVFLYWSWFAMAA*DLTR 378
T SG+ + + A+ S + +YW+W+ + A +T+
Sbjct: 98 TTSMSGMNMTNTTTTAKASSCKLSMYWNWYTIDACFITK 136
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,489,582
Number of Sequences: 5004
Number of extensions: 73922
Number of successful extensions: 274
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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