Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10g19
(863 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0185 + 21018045-21022307 31 1.6
07_03_1398 - 26271034-26271131,26271314-26271425,26271750-262717... 30 2.1
05_05_0225 - 23437454-23437793,23438348-23440573,23440771-23441603 30 2.1
03_06_0722 - 35751490-35754357 30 2.1
02_03_0146 + 15720790-15721194,15721350-15721446,15721663-157219... 30 2.7
02_02_0238 + 8163922-8164362,8165008-8165118,8165205-8165249,816... 30 2.7
01_05_0808 - 25414486-25414677,25415114-25415290,25415839-254159... 30 2.7
08_01_0329 - 2962018-2962695 29 3.6
05_05_0348 + 24271764-24271898,24273055-24273144,24273205-242733... 29 4.8
03_05_0977 + 29355824-29357056 29 4.8
02_04_0516 + 23593088-23593116,23593209-23593336,23593527-235937... 29 4.8
09_04_0472 - 17895285-17896459,17897113-17897271,17897374-178977... 29 6.3
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 29 6.3
03_02_0144 + 5910246-5910734 29 6.3
01_05_0736 - 24760576-24760690,24760885-24761108,24761188-247612... 29 6.3
11_06_0607 + 25437897-25438046,25438180-25438236,25438522-254386... 28 8.4
11_01_0635 - 5091381-5091562,5092800-5092866,5093079-5093960 28 8.4
06_03_0478 - 21259376-21259465,21259862-21259924,21260025-212600... 28 8.4
05_01_0201 - 1441063-1443836,1444658-1445758,1446367-1447179,144... 28 8.4
04_04_1365 - 32967604-32968367,32969097-32969221,32969583-32969632 28 8.4
03_05_0354 + 23411485-23411802,23411886-23412176,23414610-234146... 28 8.4
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265... 28 8.4
>11_06_0185 + 21018045-21022307
Length = 1420
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/80 (25%), Positives = 40/80 (50%)
Frame = -2
Query: 538 DSNEDEDKVESVDETYENPYIVDKSQLEEIERKLEPLMSKNKRNSVASPNLIGHESDPKR 359
D ++DE++ E D+ E P + + Q E+I L + +KN + + + E K
Sbjct: 523 DDDDDEEEEEEDDDDEEEPIHLHEDQYEQI---LREVFTKNASSKAQEQDKLVAEQATKT 579
Query: 358 PWRTNSNKEKLLRIDNELKR 299
T ++E++ ++ NE K+
Sbjct: 580 A-ATTLDEERIKQMINEAKQ 598
>07_03_1398 -
26271034-26271131,26271314-26271425,26271750-26271793,
26272158-26272485,26272569-26272982
Length = 331
Score = 30.3 bits (65), Expect = 2.1
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Frame = -2
Query: 562 DIREKFGKDSNEDED-----KVES-VDETYENPYIVDKSQLEEIERKLEPLMSKNKRNSV 401
D+ E F +N+D+D ++E+ +E EN D S EE K EP++SKN+R +
Sbjct: 202 DLEEDFVLVANQDDDDFVLVEIENQFEEEEENIAAADDS--EEDGLKNEPVLSKNRRKVM 259
Query: 400 ASP 392
P
Sbjct: 260 TQP 262
>05_05_0225 - 23437454-23437793,23438348-23440573,23440771-23441603
Length = 1132
Score = 30.3 bits (65), Expect = 2.1
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Frame = -2
Query: 565 KDIREKFGKDSNEDEDKVESVDETYENPYIVDK-SQLEEIERKLEPLMSKNKRNSVASPN 389
K++RE D + D+ E E YE+ V + + I R+ K R V S
Sbjct: 64 KEVRE-LSYDIEDCIDQYEDAVEQYEHAATVGRYPSVSTIRRR------KFSRRPVGSKT 116
Query: 388 LIGHESDPKRPWRTNSNKEKLLRIDNELKRH 296
+ E +R W N +E LR+ L+RH
Sbjct: 117 PLVPEKLKQRLWMANKIREFSLRVQEALQRH 147
>03_06_0722 - 35751490-35754357
Length = 955
Score = 30.3 bits (65), Expect = 2.1
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -2
Query: 541 KDSNEDEDKVESVDETYENPYIVDKSQLEEIERKLEPL 428
++ ++DED+ E +E E P I D++ +E I K + L
Sbjct: 207 QNEDKDEDESEEEEEEEEGPVIPDRATIEAIRAKRQQL 244
>02_03_0146 +
15720790-15721194,15721350-15721446,15721663-15721928,
15721997-15722437
Length = 402
Score = 29.9 bits (64), Expect = 2.7
Identities = 19/81 (23%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Frame = -2
Query: 664 KMMTDEEKSKIAKLLHD----VAVKENQLPERCSGLVKDIREKFGKDSNEDEDKVESVDE 497
+++ E+K K +++ D +A++E + E+ L + + + G+ SN++ VES DE
Sbjct: 283 ELLAKEDKKKAIQIMQDREIAMAIQEKEEKEQHKVLKRGLETR-GESSNKEIMAVESKDE 341
Query: 496 TYENPYIVDKSQLEEIERKLE 434
+ + Q+ I+ +E
Sbjct: 342 SLPMIKVGQNQQMRSIKEGME 362
>02_02_0238 +
8163922-8164362,8165008-8165118,8165205-8165249,
8166066-8166138,8166215-8166327,8166430-8166489,
8167287-8167334,8167422-8167490,8167618-8167679,
8167771-8167828
Length = 359
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -2
Query: 544 GKDSNEDEDKVESVDETYENPYIVDKSQLEEIERKLEP 431
GK+ E+ KVE +E E Y D +LEE+ KL P
Sbjct: 37 GKEEEEEAAKVEEEEEE-EREYKSDMRKLEELMSKLNP 73
>01_05_0808 - 25414486-25414677,25415114-25415290,25415839-25415928,
25416016-25416081,25416170-25416240,25416375-25416450,
25416567-25420098,25421464-25421834
Length = 1524
Score = 29.9 bits (64), Expect = 2.7
Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 3/132 (2%)
Frame = -2
Query: 703 INNTKPD-IIEQFSKMMTDEEKSKIAKLLHDVAVKENQLPERCSGLVKDIREKFGKDSNE 527
I P+ +I + K EEK+ I L DV K L + ++ +++ E
Sbjct: 835 ITEAPPESLIHKEIKKFGTEEKAYIT-LEGDVVQKSGSLEREANITLESASANENEEAEE 893
Query: 526 DEDKVESVD--ETYENPYIVDKSQLEEIERKLEPLMSKNKRNSVASPNLIGHESDPKRPW 353
VE ++ ET+ + Y ++I+ S+N+ + + G+E K PW
Sbjct: 894 ANAFVEGINVMETHVSTYGTSVEDSDQIQD------SENRMDGMGDLVSHGNEEAAKDPW 947
Query: 352 RTNSNKEKLLRI 317
NS K ++ I
Sbjct: 948 LDNSEKSQVEEI 959
>08_01_0329 - 2962018-2962695
Length = 225
Score = 29.5 bits (63), Expect = 3.6
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = -2
Query: 652 DEEKSKIAKLLHDVAVKENQLPERCSGLVKDIREKFGKDSNEDEDKVESVDETYENPYIV 473
D+E K+ + D A +L +G K K D E+E S + E+
Sbjct: 140 DDEVDKVMRWAMDAA----RLDVATAGAGKAKSTKKDDDEEEEEKDQTSSSVSSEDEEEE 195
Query: 472 DKSQLE-EIERKLEPLMSKNK 413
++ +LE E ERK + +MSKNK
Sbjct: 196 EEEKLEKERERKRKEMMSKNK 216
>05_05_0348 +
24271764-24271898,24273055-24273144,24273205-24273303,
24273725-24273826,24273912-24274088,24274193-24274398,
24274491-24274575,24274641-24274798,24274873-24274948,
24275117-24275245,24275313-24275457,24275561-24275691,
24276183-24276335,24276447-24276636,24277006-24277139,
24277248-24277406,24277659-24277964,24278040-24278216,
24278446-24278529,24278592-24278822,24278913-24279002,
24279090-24279211,24279293-24279448,24279477-24279635,
24279705-24279765,24280004-24280138,24280384-24280471,
24280548-24280620,24280883-24280994,24281691-24281711
Length = 1327
Score = 29.1 bits (62), Expect = 4.8
Identities = 20/75 (26%), Positives = 39/75 (52%)
Frame = -2
Query: 655 TDEEKSKIAKLLHDVAVKENQLPERCSGLVKDIREKFGKDSNEDEDKVESVDETYENPYI 476
T+++ SKI + +V + +P+ + K ++EKF NE+E +E + E
Sbjct: 417 TEKDTSKIDESTKEVEESSSLIPQLEEEIPK-LQEKF----NEEEKVLEQIKENSREETE 471
Query: 475 VDKSQLEEIERKLEP 431
+S+L ++ +LEP
Sbjct: 472 RLRSKLTQVRSELEP 486
>03_05_0977 + 29355824-29357056
Length = 410
Score = 29.1 bits (62), Expect = 4.8
Identities = 21/102 (20%), Positives = 45/102 (44%)
Frame = -2
Query: 616 DVAVKENQLPERCSGLVKDIREKFGKDSNEDEDKVESVDETYENPYIVDKSQLEEIERKL 437
++ + LP + + E+ + NE+ ++ DE E+P +D+ L++ +
Sbjct: 64 EIRLGRKDLPTKLEADSSTLDERIEDEENEEMEQEMKHDENDEDP--IDEPDLDKDDDLP 121
Query: 436 EPLMSKNKRNSVASPNLIGHESDPKRPWRTNSNKEKLLRIDN 311
EP ++ + +G D +R R+ ++EK DN
Sbjct: 122 EP--GEHSADKDERSEDVGVFEDEERKERSQEDQEKTFHGDN 161
>02_04_0516 +
23593088-23593116,23593209-23593336,23593527-23593714,
23593861-23593919,23594997-23595345,23596081-23596333,
23596404-23597476
Length = 692
Score = 29.1 bits (62), Expect = 4.8
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = -2
Query: 526 DEDKVESVD-ETYENPYIVDKSQLEEIERKLEPLMSKNKRNSVASPNLIGHESDPKRPWR 350
DED VE+ E NP ++ K + ++ ++K + K K+N + K+ R
Sbjct: 49 DEDDVENYQQENIWNPVVMKKKKKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKKKKR 108
Query: 349 TNSNKEKLLRID 314
SNK + + D
Sbjct: 109 WPSNKAQHIMSD 120
>09_04_0472 -
17895285-17896459,17897113-17897271,17897374-17897794,
17898520-17898552,17898902-17899384
Length = 756
Score = 28.7 bits (61), Expect = 6.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 206 CRNRFFSTLFYYITHFSIRQRGDQVCSFVQV 298
C+ F + +YY T+FS R CSF+ V
Sbjct: 197 CKLDFPNGTWYYSTYFSKRNNNSSPCSFITV 227
>04_04_1144 +
31222556-31222633,31223238-31227665,31227724-31227789,
31227790-31228014,31228097-31228255,31228393-31228551,
31228855-31229013,31229371-31229490,31229604-31229825
Length = 1871
Score = 28.7 bits (61), Expect = 6.3
Identities = 34/146 (23%), Positives = 70/146 (47%), Gaps = 5/146 (3%)
Frame = -2
Query: 640 SKIAKLLHDVAVKENQLPERCSGLVKDIREKFGK--DSNEDEDKVESVD---ETYENPYI 476
S++ K L + ++ + S L ++I+ K D + E+ + S + +
Sbjct: 216 SELDKTLETAQLNMKEMEAQISSLQEEIKGHQDKAIDHQQVEESLRSTLSELKMVQEALE 275
Query: 475 VDKSQLEEIERKLEPLMSKNKRNSVASPNLIGHESDPKRPWRTNSNKEKLLRIDNELKRH 296
+ KSQ++++E+KL S++ S + L H S + S KEK L+++NEL
Sbjct: 276 LSKSQVDDLEQKLA---SQDANISHLTEELSLHRSSEE------SLKEKTLKLENELSSA 326
Query: 295 LDKATDLIAPLSDGEMSDIIKQSREE 218
++ I L + E+ + +Q++E+
Sbjct: 327 HEELQAKILNLQEMEIK-LEEQAKEK 351
>03_02_0144 + 5910246-5910734
Length = 162
Score = 28.7 bits (61), Expect = 6.3
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 259 DGEMSDIIKQSREESITTRPVEY 191
D EMSDI+KQ R + TR V +
Sbjct: 84 DDEMSDIVKQRRRPRVCTRKVRW 106
>01_05_0736 -
24760576-24760690,24760885-24761108,24761188-24761248,
24761909-24763992
Length = 827
Score = 28.7 bits (61), Expect = 6.3
Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Frame = -2
Query: 622 LHDVAVK-ENQLPERCSGLVKDIREKFGKDSNEDEDKVESVDETYENPYIVDKSQLEEIE 446
+ DV K E+++ + G + E+ K+ +ED ES+ +T+E D S E++
Sbjct: 422 ISDVNCKGEHKVNDDDDGSLSMGSEQKRKECDEDSLVDESMCKTHEQKSKDDHSSPEDVS 481
Query: 445 RKLEPLMSKNKRNSVASPNLIGHESDPKRPWRTNSNKEKLLRIDNELKRHLDKATDL 275
+ E +K+ +S N HE + K+ TNS + + L ++E K D+ + L
Sbjct: 482 KTHEFDSTKDNISSAVDGN-EKHEFESKKD-DTNSLEGESLNKEHEQKSKEDENSGL 536
>11_06_0607 +
25437897-25438046,25438180-25438236,25438522-25438602,
25438720-25438777,25438888-25438991,25439064-25439115,
25439232-25439281,25440279-25440443,25440531-25440603,
25440714-25440846,25441146-25441203,25441411-25441458,
25441593-25441676,25441803-25441868,25442419-25442502
Length = 420
Score = 28.3 bits (60), Expect = 8.4
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -2
Query: 541 KDSNEDEDKVESVDETYENPYIVDKSQLEEIERKLEPLMSKN 416
K++ +D D E +D E+ +QLEE+E KL+ L+ N
Sbjct: 119 KENEDDPDMAEMIDSEMESL----SNQLEELEEKLKLLLLPN 156
>11_01_0635 - 5091381-5091562,5092800-5092866,5093079-5093960
Length = 376
Score = 28.3 bits (60), Expect = 8.4
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = -2
Query: 667 SKMMTDEEKSKIAKLLHDVAVKENQLPERCSGLVKDIREKFGKDSNEDEDKVESVDETYE 488
S T +S + L + KE ++ E ++ E +DS+EDED+ E ++Y
Sbjct: 300 SSTCTGSRESHSSDLFQVFSFKEIEILEGYDNDQDEVEEDEDEDSHEDEDENE---DSYG 356
Query: 487 NPY 479
+PY
Sbjct: 357 DPY 359
>06_03_0478 - 21259376-21259465,21259862-21259924,21260025-21260066,
21260180-21260461,21261084-21261587,21261973-21261981,
21262122-21262196,21262375-21262449,21262557-21263494,
21263577-21263607,21263694-21263979,21264691-21264905,
21265329-21265437,21265556-21265611,21265730-21265822,
21266348-21266393,21266496-21267221,21267489-21267550,
21267738-21268013,21268604-21268735,21268835-21268909
Length = 1394
Score = 28.3 bits (60), Expect = 8.4
Identities = 36/178 (20%), Positives = 78/178 (43%), Gaps = 1/178 (0%)
Frame = -2
Query: 664 KMMTDEEKSKIAKLLHDVAVKENQLPERCSGL-VKDIREKFGKDSNEDEDKVESVDETYE 488
KM D + +L+ + +EN + + + V+ + ++ +D D ++ E YE
Sbjct: 1163 KMSADHSTAPPKELIKEG--EENMNTDNSAAVHVEPVADEKMEDEEPDYEEDPEEVELYE 1220
Query: 487 NPYIVDKSQLEEIERKLEPLMSKNKRNSVASPNLIGHESDPKRPWRTNSNKEKLLRIDNE 308
+ +D++ EE+ + E ++ + V + G+++ +R N+N + +
Sbjct: 1221 DDEEMDEAAAEELVEQNEDNLNDKAKQEVTTEE-DGNKNTEERESENNANMLEKAASGED 1279
Query: 307 LKRHLDKATDLIAPLSDGEMSDIIKQSREESITTRPVEYVRLVDTVEEAKKTLFNFQY 134
+ ++K+ + S E D K +E TTR + D V + K+ L F+Y
Sbjct: 1280 KQSVVEKSASVEGKQSVSEKGD--KAVGKEVKTTRSQKGDSTKDEVVD-KELLQAFRY 1334
>05_01_0201 -
1441063-1443836,1444658-1445758,1446367-1447179,
1447386-1447440
Length = 1580
Score = 28.3 bits (60), Expect = 8.4
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = -2
Query: 388 LIGHESDPKRPWRTNSNKEKLLRIDNELKRHLDKATDLIAPLSDGEMSDIIKQSREESIT 209
L+ HE + SN KLL + + + L+K T+L +GE+ + ++R ++
Sbjct: 344 LVQHEDSCSGDSKRLSNVSKLLLLKESISKELEK-TELEIDSLEGELKSVNVEARNRTLK 402
Query: 208 TRP 200
P
Sbjct: 403 DPP 405
>04_04_1365 - 32967604-32968367,32969097-32969221,32969583-32969632
Length = 312
Score = 28.3 bits (60), Expect = 8.4
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 701 YKIYCRLGNHWHRCSHSQINLV 766
Y Y RL NHW++C + + V
Sbjct: 260 YVTYLRLNNHWYKCDDAWVTRV 281
>03_05_0354 +
23411485-23411802,23411886-23412176,23414610-23414675,
23415186-23415645,23415963-23416189,23416362-23416649,
23416955-23416966
Length = 553
Score = 28.3 bits (60), Expect = 8.4
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -2
Query: 586 ERCSGLVKDIRE--KFGKDSNEDEDKVESVDETYENPY 479
ER +D RE K G D +EDED+ E VD+ E+ Y
Sbjct: 16 ERACLAEQDHREEKKEGDDEDEDEDEDEDVDKDGEDRY 53
>02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,
2657523-2657649,2657731-2657812,2658172-2658196
Length = 2621
Score = 28.3 bits (60), Expect = 8.4
Identities = 22/95 (23%), Positives = 53/95 (55%), Gaps = 5/95 (5%)
Frame = -2
Query: 703 INNTKPDI--IEQFSKMMTDEEKS---KIAKLLHDVAVKENQLPERCSGLVKDIREKFGK 539
+ N + +I +E+ S+M+ +++K+ ++++L AV +Q G +KD+ ++ K
Sbjct: 2257 LENARMEIHNLEKHSEMLLNQKKNLETQVSELKDMEAVAHDQ-----HGRIKDLSDELSK 2311
Query: 538 DSNEDEDKVESVDETYENPYIVDKSQLEEIERKLE 434
E E ++++DE E V +++ ++E+ L+
Sbjct: 2312 KDQEIEGLMQALDEE-ERELEVLENKSNDLEKMLQ 2345
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,201,251
Number of Sequences: 37544
Number of extensions: 420613
Number of successful extensions: 1195
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1189
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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