Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10g18
(766 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 31 0.24
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 29 0.73
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch... 29 0.96
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe... 26 5.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 5.1
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa... 26 5.1
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 5.1
SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po... 26 6.8
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 25 9.0
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 25 9.0
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 25 9.0
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 30.7 bits (66), Expect = 0.24
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -1
Query: 667 DYEQRFGVDPPSTPVAYAPPAWSTTPVIEQSTTSNGSNY 551
D ++ G+DPP + Y PP T +++ S +N+
Sbjct: 158 DLYRQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTAANF 196
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 29.1 bits (62), Expect = 0.73
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -1
Query: 655 RFGVDPPSTPVAYAPPAWSTTPVIEQSTTSNGSNY 551
R GV PP + Y PP S T + T G N+
Sbjct: 576 RLGVRPPKGVLLYGPPGCSKTITAKAIATETGLNF 610
>SPAC1006.02 |||WD repeat protein, human GNB1L
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 368
Score = 28.7 bits (61), Expect = 0.96
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +2
Query: 605 CWWCIGNRSR--WRIHTKSLLIIVIVNGLRLHSH 700
CW R + WR HTK++L + IV G L +H
Sbjct: 39 CWCLTSMRPKCAWRAHTKTILGMQIVKGGALCTH 72
>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 26.2 bits (55), Expect = 5.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 659 AKIWCGSSIDSCCLCTTSMVYNA 591
A++ CGS+I++C T V NA
Sbjct: 163 ARLACGSAIETCTAVVTGQVKNA 185
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 5.1
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 585 SNNQPPATAATTIYKSIPGQRPTSMSPAIA*FL*PPI 475
S P +T+A I SIP RP P+++ PPI
Sbjct: 220 SAGTPTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPI 256
>SPAC2G11.13 |atg22||autophagy associated protein Atg22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 26.2 bits (55), Expect = 5.1
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 559 CRCWWLIVRSP 591
C CWWLI+ +P
Sbjct: 278 CSCWWLILSTP 288
>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 26.2 bits (55), Expect = 5.1
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -3
Query: 266 VVNLYYYILFCLLPRLFSHK 207
++ YYY+L CL P F K
Sbjct: 66 IIYYYYYLLICLSPHFFPIK 85
>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 434
Score = 25.8 bits (54), Expect = 6.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 185 VNGDSLKIYVKTDAVTNRIGYNNTNLLH 268
+N DS++IY D +TN+I +H
Sbjct: 32 INADSMQIYRGFDTITNKITVEEQENVH 59
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = -1
Query: 655 RFGVDPPSTPVAYAPPAWSTTPVIEQSTTSNGSNY 551
R G+ PP + Y PP T + S G N+
Sbjct: 160 RVGIKPPKGVLLYGPPGTGKTLLARAVAASLGVNF 194
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 149 IKKLHYLRSN-KPVNGDSLKIYVKTDAVTNRIGYNNTNLL 265
+K++ L S K ++ S K+Y + NR+ +NN+ +
Sbjct: 1255 LKEVKELGSTFKSISSTSFKVYSQLTIFANRVSFNNSTAI 1294
>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1616
Score = 25.4 bits (53), Expect = 9.0
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -2
Query: 318 VTSLGSLEFAVPK-TALQCSKFVLLYPILFVTASVFT*IFNE 196
V L SL+ AV T L SKF L + +L + + V T FNE
Sbjct: 1249 VDFLSSLQLAVESLTDLLISKFKLNHLVLELWSDVLTYAFNE 1290
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,802,770
Number of Sequences: 5004
Number of extensions: 53419
Number of successful extensions: 178
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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