Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10g18
         (766 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0237 - 6674145-6674354,6674458-6675087,6675135-6675541,667...    31   0.76 
04_03_0681 + 18628107-18629346,18630476-18630486,18630836-186309...    29   4.1  
08_01_0030 + 222748-222829,223224-223448,223800-224204,224773-22...    29   5.4  
02_04_0607 - 24302582-24303075,24303150-24304197                       28   7.1  
01_01_1207 - 9710830-9711291                                           28   9.4  

>03_02_0237 -
           6674145-6674354,6674458-6675087,6675135-6675541,
           6677206-6677253,6677630-6677702
          Length = 455

 Score = 31.5 bits (68), Expect = 0.76
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -1

Query: 643 DPPSTPVAYAPPAWSTTPVIEQSTTSNGSNYHLQEYPWAAPYVDVSSDSLVF 488
           DPPS+   +A  A S  PV++     NG+ + +  YP+ A   D   ++L F
Sbjct: 190 DPPSSGAFHADLAGSLDPVLD-FLKQNGAPFMINPYPYFAYASDTRPETLAF 240


>04_03_0681 +
           18628107-18629346,18630476-18630486,18630836-18630943,
           18631158-18631250
          Length = 483

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 19/51 (37%), Positives = 24/51 (47%)
 Frame = +2

Query: 251 NTNLLHCNAVLGTANSSEPSDVTVVRFVGVDGDIPSGLTACEIHAPARVAA 403
           +T   H NA    A SS+   + V  FV  D   P  LT C +H PA + A
Sbjct: 25  HTGRCHDNATTARAKSSDGYPIEV-SFVFAD---PPALTRCFVHCPAGLTA 71


>08_01_0030 +
           222748-222829,223224-223448,223800-224204,224773-225389
          Length = 442

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 20/69 (28%), Positives = 32/69 (46%)
 Frame = -1

Query: 700 MRVESEAVDDYDYEQRFGVDPPSTPVAYAPPAWSTTPVIEQSTTSNGSNYHLQEYPWAAP 521
           +  ES A+  +       V PP  P+   P + ST+     S +S   NY+LQ Y   +P
Sbjct: 284 LSAESTALSSF--RSTVAVSPPR-PIRRHPSSQSTSRAY--SISSAPRNYNLQRYYTNSP 338

Query: 520 YVDVSSDSL 494
           Y+  S  ++
Sbjct: 339 YISTSRSNV 347


>02_04_0607 - 24302582-24303075,24303150-24304197
          Length = 513

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -1

Query: 706 DSMRVESEAVDDYDYEQRFGVDPPSTPVAYAPPAWSTTPVIEQSTT 569
           D  R+ +EA ++   +  F V PP T  A + P W   P  +  T+
Sbjct: 112 DHPRLVTEAAENGWAQFVFAVAPPRTRSASSSPLWGLCPACDSGTS 157


>01_01_1207 - 9710830-9711291
          Length = 153

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 218 TDAVTNRIGYNNTNLLHCNAVLGTANSSEPSDVTVVRFVGVDGDIP 355
           T   T+ +GY    L    A +    +S   D  VV   GV+G++P
Sbjct: 71  TTTTTSVVGYRRALLPREAAAVVMPTTSTAEDAAVVGMAGVEGELP 116


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,085,813
Number of Sequences: 37544
Number of extensions: 351440
Number of successful extensions: 1346
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1344
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)