Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10g18
(766 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75712-1|CAB00040.1| 724|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z32840-1|CAA83679.1| 584|Caenorhabditis elegans Hypothetical pr... 29 4.8
DQ340623-1|ABC65811.1| 584|Caenorhabditis elegans chondroitin p... 29 4.8
Z81039-4|CAB02776.1| 361|Caenorhabditis elegans Hypothetical pr... 28 6.3
M22363-2|AAA28159.1| 429|Caenorhabditis elegans protein ( C.ele... 28 6.3
M22363-1|AAA28158.1| 467|Caenorhabditis elegans protein ( C.ele... 28 6.3
L10990-6|AAB59176.1| 467|Caenorhabditis elegans Uncoordinated p... 28 6.3
L10990-5|AAB59175.1| 429|Caenorhabditis elegans Uncoordinated p... 28 6.3
AC024777-5|AAF60564.1| 506|Caenorhabditis elegans Hypothetical ... 28 8.4
>Z75712-1|CAB00040.1| 724|Caenorhabditis elegans Hypothetical
protein K04G2.3 protein.
Length = 724
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -1
Query: 658 QRFGVDPPSTPVAYAPPAWSTTPVIEQSTTSNGSNY 551
+RFG+DPP+ + Y PP S T + + N+
Sbjct: 486 ERFGIDPPAGILLYGPPGCSKTLIARALASEAKMNF 521
>Z32840-1|CAA83679.1| 584|Caenorhabditis elegans Hypothetical
protein C07G2.1a protein.
Length = 584
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -1
Query: 670 YDYEQRFGVDPPSTPVAYAPPAWSTT-PVIEQSTTSNGSNYHLQE 539
Y E+ + P+T + Y P TT P +E++TT+ G ++E
Sbjct: 324 YPSEKTTAENVPTTTIGYEPEVVETTAPYVEETTTTVGYKPEVEE 368
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/58 (31%), Positives = 21/58 (36%)
Frame = -1
Query: 685 EAVDDYDYEQRFGVDPPSTPVAYAPPAWSTTPVIEQSTTSNGSNYHLQEYPWAAPYVD 512
E Y E D PST Y P TT E TT+ Y + PYV+
Sbjct: 388 ETTAPYVEETTTAADVPSTTAVYEPEVVETTTEAEVPTTTT-VGYEPEVVETTVPYVE 444
>DQ340623-1|ABC65811.1| 584|Caenorhabditis elegans chondroitin
proteoglycan-1 protein.
Length = 584
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -1
Query: 670 YDYEQRFGVDPPSTPVAYAPPAWSTT-PVIEQSTTSNGSNYHLQE 539
Y E+ + P+T + Y P TT P +E++TT+ G ++E
Sbjct: 324 YPSEKTTAENVPTTTIGYEPEVVETTAPYVEETTTTVGYKPEVEE 368
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/58 (31%), Positives = 21/58 (36%)
Frame = -1
Query: 685 EAVDDYDYEQRFGVDPPSTPVAYAPPAWSTTPVIEQSTTSNGSNYHLQEYPWAAPYVD 512
E Y E D PST Y P TT E TT+ Y + PYV+
Sbjct: 388 ETTAPYVEETTTAADVPSTTAVYEPEVVETTTEAEVPTTTT-VGYEPEVVETTVPYVE 444
>Z81039-4|CAB02776.1| 361|Caenorhabditis elegans Hypothetical
protein C25D7.5 protein.
Length = 361
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = +2
Query: 98 NSGLRNYVIVMN*EKSTIKKLHYLRSNKPVNGDSLKIYVKTDAVTNRIGYNNTNLLHCNA 277
++ +N VI+ K+T + R +PV ++ + + T +R Y+N+ LH N+
Sbjct: 62 DAAFKNQVILTT-PKTTTTTVTTTRKRQPVKKSNVVLQMLTIPSLSRGNYSNSLKLHTNS 120
Query: 278 VL 283
VL
Sbjct: 121 VL 122
>M22363-2|AAA28159.1| 429|Caenorhabditis elegans protein (
C.elegans unc-86 geneencoding two alternative proteins,
complete cds. ).
Length = 429
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -1
Query: 616 APPAWSTTPVIEQSTTSNGSNYHLQEYPWAAPYVDVSSD 500
APP + STTS S+ +L YP A P D+ +D
Sbjct: 193 APPPFQYNMTHPFSTTSIASSNNLARYPIAPPTSDMDTD 231
>M22363-1|AAA28158.1| 467|Caenorhabditis elegans protein (
C.elegans unc-86 geneencoding two alternative proteins,
complete cds. ).
Length = 467
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -1
Query: 616 APPAWSTTPVIEQSTTSNGSNYHLQEYPWAAPYVDVSSD 500
APP + STTS S+ +L YP A P D+ +D
Sbjct: 231 APPPFQYNMTHPFSTTSIASSNNLARYPIAPPTSDMDTD 269
>L10990-6|AAB59176.1| 467|Caenorhabditis elegans Uncoordinated
protein 86, isoform b protein.
Length = 467
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -1
Query: 616 APPAWSTTPVIEQSTTSNGSNYHLQEYPWAAPYVDVSSD 500
APP + STTS S+ +L YP A P D+ +D
Sbjct: 231 APPPFQYNMTHPFSTTSIASSNNLARYPIAPPTSDMDTD 269
>L10990-5|AAB59175.1| 429|Caenorhabditis elegans Uncoordinated
protein 86, isoform a protein.
Length = 429
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -1
Query: 616 APPAWSTTPVIEQSTTSNGSNYHLQEYPWAAPYVDVSSD 500
APP + STTS S+ +L YP A P D+ +D
Sbjct: 193 APPPFQYNMTHPFSTTSIASSNNLARYPIAPPTSDMDTD 231
>AC024777-5|AAF60564.1| 506|Caenorhabditis elegans Hypothetical
protein Y42H9AR.1 protein.
Length = 506
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 646 VDPPSTPVAYAPPAWSTTPVIEQSTTSNGSNYHLQEY 536
V+PP++ AY PP ++ ST SN S Y Y
Sbjct: 378 VNPPTSYQAYQPPVPTSYYPPAASTASNSSGYQAPYY 414
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,654,091
Number of Sequences: 27780
Number of extensions: 309051
Number of successful extensions: 1081
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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