Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10g17
(777 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0347 + 16628129-16628244,16628343-16628512,16629141-166294... 58 8e-09
03_06_0450 + 34021248-34021595,34023030-34023434,34023779-340241... 39 0.005
05_05_0290 - 23879064-23880035 33 0.33
08_01_0420 + 3726392-3727116,3727450-3727648,3727787-3727879,372... 32 0.58
02_04_0318 - 21999640-21999705,21999706-21999768,21999822-219998... 29 3.1
07_01_1079 + 9770444-9772756 29 5.4
02_03_0204 - 16369800-16371758,16372260-16372331 29 5.4
03_02_0232 + 6614784-6614882,6616145-6616477,6616708-6616967,661... 28 7.2
>11_04_0347 +
16628129-16628244,16628343-16628512,16629141-16629409,
16630337-16630475,16630573-16630639,16630721-16630842,
16630946-16631085
Length = 340
Score = 58.0 bits (134), Expect = 8e-09
Identities = 41/108 (37%), Positives = 56/108 (51%)
Frame = +1
Query: 43 GQSAIFLIGGREKSIEPSAILLXSGDIVVMSKEARLCYHAVPKILPEYHQPWNSDLSELD 222
G IFL+GG+ + P+A+ L SGDIV+M+ EAR C+H VP+I SD +E
Sbjct: 256 GCKCIFLLGGKTRDEVPTAMFLRSGDIVLMAGEARECFHGVPRIFT------GSDQAE-- 307
Query: 223 FNKMPSFMYISNPKETIEAMNENIENDKWSEFENYIKESRININVRQV 366
I A+ + + S NYI+ SRININ+RQV
Sbjct: 308 ----------------ISALVPQLSAEDDSFILNYIQNSRININIRQV 339
>03_06_0450 +
34021248-34021595,34023030-34023434,34023779-34024123,
34024388-34024663
Length = 457
Score = 38.7 bits (86), Expect = 0.005
Identities = 19/59 (32%), Positives = 33/59 (55%)
Frame = +1
Query: 43 GQSAIFLIGGREKSIEPSAILLXSGDIVVMSKEARLCYHAVPKILPEYHQPWNSDLSEL 219
G +A FL G + S + L SGD+++ ++RL +H V +I P+ W +D ++L
Sbjct: 387 GDTAEFLYGDVNDVDKASKVDLESGDVLIFGGKSRLIFHGVSRIKPKTAPNWLTDEAKL 445
>05_05_0290 - 23879064-23880035
Length = 323
Score = 32.7 bits (71), Expect = 0.33
Identities = 18/50 (36%), Positives = 30/50 (60%)
Frame = +1
Query: 250 ISNPKETIEAMNENIENDKWSEFENYIKESRININVRQVLNEKQISLADE 399
I +P ET+++ +E +ND EFE +I+ R +R+VL+ LAD+
Sbjct: 62 IEHPGETMDSDDE--DNDLGREFEGFIRRHRRASTLRRVLDSIHDDLADD 109
>08_01_0420 +
3726392-3727116,3727450-3727648,3727787-3727879,
3728001-3728129,3728445-3728498,3728597-3728674,
3728773-3728835,3729101-3729213,3729392-3729500
Length = 520
Score = 31.9 bits (69), Expect = 0.58
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +1
Query: 217 LDFNKMPSFMYISNPKETIEAM--NENIENDKWSEFENYIKESRININVRQVLNEKQ 381
LD PS + P ET+ + ++N+ ND W FE + + +N + LNE++
Sbjct: 408 LDQQAFPSLNGL--PGETLHSYIEDQNVANDPWHGFEEWYLKEEVNKLLNSTLNERE 462
>02_04_0318 -
21999640-21999705,21999706-21999768,21999822-21999884,
21999938-22000000,22001097-22001141,22001914-22002325,
22003313-22003475,22004086-22004132,22004458-22004564,
22004651-22004684,22004754-22004807,22005599-22005723
Length = 413
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 456 YYFKVPMCF-ARPFLLPRFLCYDFLIAFFCEVVDAVMSVTE 575
YYF P+ + A LP + CY FL C+V +S+TE
Sbjct: 362 YYFLNPLPYQAIRLFLPSWHCYYFLNPLPCQVCTTELSLTE 402
>07_01_1079 + 9770444-9772756
Length = 770
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +1
Query: 163 VPKILPEYHQPWNSDLSELDFNKMPSFMYISNPKETIEAMNENIENDKWSEFENYIKESR 342
VP +L +PW LS N + +S+PK N ++ D +F + + ESR
Sbjct: 151 VPGVLKCLEKPWA--LSSASINSL-----VSSPKNVRRTTNREVKKDPIQDFIDKVNESR 203
Query: 343 I 345
+
Sbjct: 204 L 204
>02_03_0204 - 16369800-16371758,16372260-16372331
Length = 676
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = +3
Query: 558 VMSVTETPKTFNVAFHITIVFVFSSIRPKSTNYRFKVVI 674
++S T P N+++H+ + ++ S+ PK N R K ++
Sbjct: 92 MISTTLEPSYNNLSYHLKLCLLYLSVFPKGHNIRRKRIV 130
>03_02_0232 +
6614784-6614882,6616145-6616477,6616708-6616967,
6617328-6617469,6617567-6617938,6618056-6618187,
6618907-6619035,6619125-6621188
Length = 1176
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -2
Query: 566 RHNSIDNFTEKRNEKIITKEPRKQEWPCKTHRDFK 462
R N I F E + K + +EPR W C DF+
Sbjct: 242 RRNVIREFKELKELKRMRREPRCTSWFCVADTDFQ 276
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,840,402
Number of Sequences: 37544
Number of extensions: 339811
Number of successful extensions: 841
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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