Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10g16
(796 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0177 + 1214226-1214294,1214707-1214794,1216095-1216308,121... 31 1.1
09_04_0202 - 15544498-15545037,15546043-15546449,15546874-155469... 29 5.6
06_01_1011 + 7879283-7879885,7880057-7880962,7881274-7882515 29 5.6
03_04_0079 + 17102623-17102644,17102794-17102897,17104461-171046... 28 7.4
07_03_0011 + 12370624-12370684,12372573-12372718,12372793-123731... 28 9.8
05_05_0127 - 22580720-22580808,22580936-22580987,22581703-225819... 28 9.8
04_04_1457 - 33741048-33741146,33741647-33741760,33741938-337420... 28 9.8
03_02_0359 - 7788382-7788522,7788931-7789837,7791227-7791337,779... 28 9.8
>02_01_0177 +
1214226-1214294,1214707-1214794,1216095-1216308,
1216413-1216738,1216860-1217013,1217377-1217438,
1218078-1218133,1219456-1221279,1221775-1222698,
1222855-1222866
Length = 1242
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = -2
Query: 456 PMIYILMLVQVAHSTWTP-TDLSSARILTDLIMKVQDPTWRNPFQHARPFHTMTYVAKTE 280
P++Y+L++ + +WTP L A + D + + T R+P RP+ + +T
Sbjct: 266 PLLYVLLIKKFGIKSWTPWRHLQKAEKVLDPVPLIGFLTARSPLMAIRPY-GFVFRRETG 324
Query: 279 DSTS 268
DS S
Sbjct: 325 DSDS 328
>09_04_0202 -
15544498-15545037,15546043-15546449,15546874-15546977,
15547580-15547788,15548092-15549428,15551680-15551941
Length = 952
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 295 VGHRMKRTGVLEWVPPGWVLDLHYQVGKYPR 387
V +TGV++ P G +LDL VGK R
Sbjct: 19 VAQNANKTGVVDGFPVGVILDLQTMVGKIAR 49
>06_01_1011 + 7879283-7879885,7880057-7880962,7881274-7882515
Length = 916
Score = 28.7 bits (61), Expect = 5.6
Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Frame = -1
Query: 556 PGSYIGQILRDRKNGKIGGTSMPV-QTPSMYGATTNDIYSDAGPGSSLDLDTNRPVFSED 380
P + Q L + G + G+ Q S YG DI+ G LDL++ F +
Sbjct: 6 PHDFFSQSLNEAPTGHMDGSDYGFSQGSSGYGGYGTDIHFGGGGSGGLDLNSQADAFPDF 65
Query: 379 TYRPDNEGPGPNLEEPIPA 323
PG + PI A
Sbjct: 66 ASYQQILEPGSLVLPPIRA 84
>03_04_0079 +
17102623-17102644,17102794-17102897,17104461-17104660,
17104864-17105005,17105024-17105290
Length = 244
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 358 GPGPNLEEPIPARPSVSYDDLRRQNRGQY 272
GPGPN + PS+ ++ L +Q RG Y
Sbjct: 12 GPGPNTLIGLITEPSIYWNALYKQRRGGY 40
>07_03_0011 +
12370624-12370684,12372573-12372718,12372793-12373129,
12374323-12374452,12375346-12375406,12375572-12375618,
12376873-12376950,12377195-12377345,12377495-12377558,
12377735-12377893,12378007-12378128,12378952-12378981,
12379050-12379124,12379563-12379644,12379809-12379938,
12381417-12382164,12382833-12383054,12383127-12383276,
12384851-12384904,12384985-12385058,12386130-12386204,
12386365-12386584
Length = 1071
Score = 27.9 bits (59), Expect = 9.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -3
Query: 692 CRQIWTSETKPKIWSIPKGDIGS 624
C W+ ++ +IW+IP G GS
Sbjct: 283 CMSGWSGDSTARIWTIPDGPCGS 305
>05_05_0127 -
22580720-22580808,22580936-22580987,22581703-22581908,
22582019-22582152,22582239-22582369,22583333-22583392,
22583615-22583755,22583880-22584347,22584524-22584686,
22585373-22585476,22585755-22585853,22586177-22586281,
22586516-22586596,22587168-22587986,22588497-22588553
Length = 902
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 426 PGPASEYISLVVAPYIEGVCTGIEVPPIFPFF 521
PGP +YI+ AP +E G +VP I P F
Sbjct: 297 PGPQDQYINQAHAPVLENQYAG-QVPRIAPGF 327
>04_04_1457 -
33741048-33741146,33741647-33741760,33741938-33742052,
33742154-33742560,33743342-33743476,33743576-33743970,
33744225-33744916,33745014-33745097,33745195-33745286,
33745374-33745457,33745535-33745714,33746258-33746302,
33746399-33746692,33747199-33747585,33747713-33747899,
33748042-33748118,33748936-33749067,33749315-33749416,
33749744-33749827,33749902-33749992,33750105-33750178,
33750644-33750664,33751433-33751477,33752427-33752561,
33752693-33752752
Length = 1376
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1
Query: 673 LKPNPRFGPFPKVTLAVVVGYFLGKLSY 590
+KPN +FGPFP+ +AV + L L Y
Sbjct: 123 IKPN-KFGPFPESLVAVYIAQVLEGLVY 149
>03_02_0359 -
7788382-7788522,7788931-7789837,7791227-7791337,
7791437-7791507,7791582-7791659,7792564-7792770,
7792867-7793046,7793249-7793471,7794133-7794453,
7794538-7795109
Length = 936
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 605 QEVANHYCQCHLWEWTKSWVWFQMSIFDGSVC*RSE 712
Q NH EWT +W FQ S+FD C R +
Sbjct: 271 QNRRNHLILPKALEWTLNWCIFQ-SMFDSKFCVRKD 305
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,994,476
Number of Sequences: 37544
Number of extensions: 485188
Number of successful extensions: 1401
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1399
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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