Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10g16
(796 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69664-8|CAN86924.1| 1287|Caenorhabditis elegans Hypothetical pr... 33 0.24
Z69664-7|CAA93515.2| 1338|Caenorhabditis elegans Hypothetical pr... 33 0.24
Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical p... 29 2.9
Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical p... 29 2.9
Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical p... 29 2.9
Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical pr... 29 2.9
U58732-7|AAB00597.1| 345|Caenorhabditis elegans Taf (tbp-associ... 29 2.9
U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog (hedg... 29 3.8
U97015-4|AAB52342.1| 245|Caenorhabditis elegans Hypothetical pr... 28 8.9
U39676-3|AAB37032.2| 941|Caenorhabditis elegans Hypothetical pr... 28 8.9
>Z69664-8|CAN86924.1| 1287|Caenorhabditis elegans Hypothetical
protein K04D7.5b protein.
Length = 1287
Score = 33.1 bits (72), Expect = 0.24
Identities = 20/58 (34%), Positives = 26/58 (44%)
Frame = -1
Query: 532 LRDRKNGKIGGTSMPVQTPSMYGATTNDIYSDAGPGSSLDLDTNRPVFSEDTYRPDNE 359
+R RK G S V TP +GA D GP S LDL+ +D Y +N+
Sbjct: 96 MRSRKKPDDSGASSTVNTPKKFGALR---IEDRGPKSFLDLEYEEDDEYDDDYIEEND 150
>Z69664-7|CAA93515.2| 1338|Caenorhabditis elegans Hypothetical
protein K04D7.5a protein.
Length = 1338
Score = 33.1 bits (72), Expect = 0.24
Identities = 20/58 (34%), Positives = 26/58 (44%)
Frame = -1
Query: 532 LRDRKNGKIGGTSMPVQTPSMYGATTNDIYSDAGPGSSLDLDTNRPVFSEDTYRPDNE 359
+R RK G S V TP +GA D GP S LDL+ +D Y +N+
Sbjct: 96 MRSRKKPDDSGASSTVNTPKKFGALR---IEDRGPKSFLDLEYEEDDEYDDDYIEEND 150
>Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical
protein F07A11.6e protein.
Length = 2101
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1
Query: 559 MPSASQHMPAGMTTSPRSSQPLLPMSPL 642
+P SQ +G T+PRSSQP MSP+
Sbjct: 503 LPGTSQPSTSGGITTPRSSQPPPLMSPV 530
>Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical
protein F07A11.6c protein.
Length = 2392
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1
Query: 559 MPSASQHMPAGMTTSPRSSQPLLPMSPL 642
+P SQ +G T+PRSSQP MSP+
Sbjct: 794 LPGTSQPSTSGGITTPRSSQPPPLMSPV 821
>Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical
protein F07A11.6b protein.
Length = 2407
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1
Query: 559 MPSASQHMPAGMTTSPRSSQPLLPMSPL 642
+P SQ +G T+PRSSQP MSP+
Sbjct: 809 LPGTSQPSTSGGITTPRSSQPPPLMSPV 836
>Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical
protein F07A11.6a protein.
Length = 2211
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1
Query: 559 MPSASQHMPAGMTTSPRSSQPLLPMSPL 642
+P SQ +G T+PRSSQP MSP+
Sbjct: 809 LPGTSQPSTSGGITTPRSSQPPPLMSPV 836
>Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical
protein F07A11.6e protein.
Length = 2101
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1
Query: 559 MPSASQHMPAGMTTSPRSSQPLLPMSPL 642
+P SQ +G T+PRSSQP MSP+
Sbjct: 503 LPGTSQPSTSGGITTPRSSQPPPLMSPV 530
>Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical
protein F07A11.6c protein.
Length = 2392
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1
Query: 559 MPSASQHMPAGMTTSPRSSQPLLPMSPL 642
+P SQ +G T+PRSSQP MSP+
Sbjct: 794 LPGTSQPSTSGGITTPRSSQPPPLMSPV 821
>Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical
protein F07A11.6b protein.
Length = 2407
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1
Query: 559 MPSASQHMPAGMTTSPRSSQPLLPMSPL 642
+P SQ +G T+PRSSQP MSP+
Sbjct: 809 LPGTSQPSTSGGITTPRSSQPPPLMSPV 836
>Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical
protein F07A11.6a protein.
Length = 2211
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1
Query: 559 MPSASQHMPAGMTTSPRSSQPLLPMSPL 642
+P SQ +G T+PRSSQP MSP+
Sbjct: 809 LPGTSQPSTSGGITTPRSSQPPPLMSPV 836
>U58732-7|AAB00597.1| 345|Caenorhabditis elegans Taf
(tbp-associated transcriptionfactor) family protein 11.1
protein.
Length = 345
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 376 YRPDNEGPGPNLEEPIPARPSVSYDD 299
++P+ E PGP+ P PARP+ DD
Sbjct: 202 HQPEEEAPGPS--RPAPARPARKLDD 225
>U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 6 protein.
Length = 559
Score = 29.1 bits (62), Expect = 3.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -1
Query: 373 RPDNEGPGPNLEEPIPARPS 314
RP+ P P +E P+PARP+
Sbjct: 200 RPEPARPAPYIERPVPARPA 219
>U97015-4|AAB52342.1| 245|Caenorhabditis elegans Hypothetical
protein F48C1.6 protein.
Length = 245
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = -1
Query: 325 ARPSVSYDDLRRQNRG 278
A+ S +Y+D+RRQNRG
Sbjct: 127 AKSSTNYEDIRRQNRG 142
>U39676-3|AAB37032.2| 941|Caenorhabditis elegans Hypothetical
protein C23F12.2 protein.
Length = 941
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 113 TNMATRWNDTVVLANLIHARGP*CCP 36
TN T WND + L+ L+ P CP
Sbjct: 145 TNFRTNWNDGIALSALLEYCQPGLCP 170
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,153,541
Number of Sequences: 27780
Number of extensions: 393934
Number of successful extensions: 1100
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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