Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10g15
         (819 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces pomb...    32   0.085
SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate syntha...    29   0.79 
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    26   5.6  
SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos...    26   7.4  
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom...    25   9.8  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    25   9.8  

>SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 32.3 bits (70), Expect = 0.085
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -2

Query: 737 FCEFVGND--LSSYDDTEAWPSLFDDFVEYENDQVNQN 630
           F  FV +D   S+YD   AWP+L D+FV Y  +   +N
Sbjct: 211 FSVFVKSDPNCSNYDFEGAWPTLIDEFVSYYREHGYKN 248


>SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate synthase
           Arg5 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 415

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 10/29 (34%), Positives = 21/29 (72%)
 Frame = -1

Query: 819 LDRXLNYLEKNPQIRGIPKDTWYMFLNFL 733
           + R ++ ++ +P+ RG P DT+Y+F N++
Sbjct: 375 VSRPISSVQFHPEARGGPMDTFYLFDNYI 403


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -2

Query: 722 GNDLSSYDDTEAWPSLFDDFVE-YENDQVNQNVTKSS 615
           G DLS+ D   A+PSL  + V  Y  D  N NV  S+
Sbjct: 400 GADLSTLDQGSAFPSLAKNPVNPYSKDTWNLNVIAST 436


>SPAC664.07c |rad9||checkpoint clamp complex protein
           Rad9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -2

Query: 707 SYDDTEAWPSLFDDFVEYENDQVNQNVTK 621
           SY+ T+   ++FD  + + N Q+N  + K
Sbjct: 155 SYEQTQTLHAVFDKSLSHNNFQINSKILK 183


>SPBC3B9.09 |vps36||RBZ zinc finger protein
           Vps36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 647 DQVNQNVTKSSIKIQD*RSVKSSSRYF 567
           D V+       IKI D R V+ +SRYF
Sbjct: 56  DSVDPKKNSLKIKISDIRDVQHTSRYF 82


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -2

Query: 707 SYDDTEAWPSLFDDFVEYENDQVNQNVTKSSIKIQD 600
           SYD  +  P  +  +V + + +  Q  +KSS  I+D
Sbjct: 73  SYDKNKGTPPDYTSYVSHSDAEPEQASSKSSTSIED 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,953,787
Number of Sequences: 5004
Number of extensions: 56238
Number of successful extensions: 145
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)