Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10g15
         (819 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1373 - 26110436-26110584,26110585-26110752,26110829-261108...    36   0.029
06_01_0903 - 6939672-6939782,6940051-6940110,6940221-6940322,694...    36   0.039
01_06_1200 - 35362412-35362432,35362526-35362715,35362799-353628...    32   0.48 
08_02_0801 + 21349434-21349438,21349952-21349978,21351175-213512...    29   4.4  

>07_03_1373 -
           26110436-26110584,26110585-26110752,26110829-26110896,
           26111755-26111800,26111929-26112025,26112802-26112884,
           26112987-26113062,26113147-26113195,26113517-26113601,
           26114247-26114331
          Length = 301

 Score = 36.3 bits (80), Expect = 0.029
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = -2

Query: 737 FCEFVGNDLSSYDDTEAWPSLFDDFVEYENDQVNQNVTKSSIKIQ 603
           F   V  DL  YD   AWP L DDFVE+ +   N     S+++ Q
Sbjct: 144 FSRCVNEDLEGYDPKGAWPVLVDDFVEHMHRIYNSCDCSSAMESQ 188


>06_01_0903 -
           6939672-6939782,6940051-6940110,6940221-6940322,
           6940464-6940513,6940686-6940750,6940849-6940931,
           6941117-6941140,6941798-6941856,6942041-6942174,
           6942823-6942884,6942908-6942976
          Length = 272

 Score = 35.9 bits (79), Expect = 0.039
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = -2

Query: 737 FCEFVGNDLSSYDDTEAWPSLFDDFVEY 654
           F + +   LS+YD+  AWP L D+FVEY
Sbjct: 234 FVKTIDPQLSNYDEEGAWPYLIDEFVEY 261


>01_06_1200 -
           35362412-35362432,35362526-35362715,35362799-35362899,
           35362985-35363116,35363204-35363302,35363493-35363568,
           35363649-35363941,35364032-35364160,35364332-35364480,
           35364562-35364633,35364728-35364776,35365039-35365107,
           35365201-35365256,35365357-35365429,35365508-35365584,
           35365847-35365934,35366086-35366259,35366358-35366473,
           35366681-35366984,35367084-35367146,35367224-35367286,
           35367393-35367506,35368672-35368675,35368894-35368952,
           35369024-35369098,35369691-35369798,35372331-35372792
          Length = 1071

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = -2

Query: 725 VGNDLSSYDDTEAWPSLFDDFVEYENDQVNQNVTKSSIKIQD*RSVKSSSRYFV 564
           + +D S YDD+E+  + FD   +Y +   + N+ K  +KI   +  K   + F+
Sbjct: 252 ISSDESHYDDSESSENFFDGVSKYTDSSSDDNMEKLLLKIFKKQIAKKMKKKFI 305


>08_02_0801 +
           21349434-21349438,21349952-21349978,21351175-21351249,
           21351333-21351369,21351469-21351552,21351821-21351881,
           21351961-21352067,21352162-21352227,21352366-21352461
          Length = 185

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 737 FCEFVG-NDLSSYDDTEAWPSLFDDFVEY 654
           FC  +    L +YD   AWP + D+FVE+
Sbjct: 151 FCNEINFPSLDNYDSDLAWPLILDNFVEW 179


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,376,397
Number of Sequences: 37544
Number of extensions: 274205
Number of successful extensions: 494
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)