Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10g15
(819 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC040442-1|AAH40442.1| 304|Homo sapiens DCN1, defective in cull... 46 1e-04
AY364247-1|AAQ76806.1| 304|Homo sapiens hypothetical protein pr... 46 1e-04
BC013163-1|AAH13163.2| 254|Homo sapiens DCUN1D1 protein protein. 42 0.004
BC009478-1|AAH09478.1| 259|Homo sapiens DCN1, defective in cull... 42 0.004
AK025764-1|BAB15235.1| 137|Homo sapiens protein ( Homo sapiens ... 42 0.004
AF456426-1|AAL78673.1| 259|Homo sapiens squamous cell carcinoma... 42 0.004
AF456425-1|AAL78672.1| 259|Homo sapiens squamous cell carcinoma... 42 0.004
AF292100-1|AAG00606.2| 259|Homo sapiens RP42 protein protein. 42 0.004
BC056669-1|AAH56669.1| 259|Homo sapiens DCN1, defective in cull... 40 0.008
AL442125-1|CAI39777.1| 126|Homo sapiens DCN1, defective in cull... 40 0.008
AL160251-1|CAI39428.1| 126|Homo sapiens DCN1, defective in cull... 40 0.008
AK000099-1|BAA90944.1| 126|Homo sapiens protein ( Homo sapiens ... 40 0.008
D87466-1|BAA13405.1| 309|Homo sapiens KIAA0276 protein. 38 0.044
BX537944-1|CAD97912.1| 315|Homo sapiens hypothetical protein pr... 38 0.044
BC053897-1|AAH53897.2| 257|Homo sapiens DCN1, defective in cull... 38 0.044
BC004169-1|AAH04169.1| 237|Homo sapiens DCN1, defective in cull... 37 0.10
AK056993-1|BAB71336.1| 237|Homo sapiens protein ( Homo sapiens ... 37 0.10
>BC040442-1|AAH40442.1| 304|Homo sapiens DCN1, defective in cullin
neddylation 1, domain containing 3 (S. cerevisiae)
protein.
Length = 304
Score = 46.4 bits (105), Expect = 1e-04
Identities = 18/32 (56%), Positives = 25/32 (78%)
Frame = -2
Query: 737 FCEFVGNDLSSYDDTEAWPSLFDDFVEYENDQ 642
F + +G DLS+Y + EAWPSLFD FVE+E ++
Sbjct: 249 FTQVIGPDLSNYSEDEAWPSLFDTFVEWEMER 280
Score = 41.5 bits (93), Expect = 0.004
Identities = 18/29 (62%), Positives = 23/29 (79%), Gaps = 1/29 (3%)
Frame = -1
Query: 819 LDRXLNYLEKNPQ-IRGIPKDTWYMFLNF 736
LD+ LN+L +NP I+GI +DTW MFLNF
Sbjct: 221 LDQWLNFLTENPSGIKGISRDTWNMFLNF 249
>AY364247-1|AAQ76806.1| 304|Homo sapiens hypothetical protein
protein.
Length = 304
Score = 46.4 bits (105), Expect = 1e-04
Identities = 18/32 (56%), Positives = 25/32 (78%)
Frame = -2
Query: 737 FCEFVGNDLSSYDDTEAWPSLFDDFVEYENDQ 642
F + +G DLS+Y + EAWPSLFD FVE+E ++
Sbjct: 249 FTQVIGPDLSNYSEDEAWPSLFDTFVEWEMER 280
Score = 41.5 bits (93), Expect = 0.004
Identities = 18/29 (62%), Positives = 23/29 (79%), Gaps = 1/29 (3%)
Frame = -1
Query: 819 LDRXLNYLEKNPQ-IRGIPKDTWYMFLNF 736
LD+ LN+L +NP I+GI +DTW MFLNF
Sbjct: 221 LDQWLNFLTENPSGIKGISRDTWNMFLNF 249
>BC013163-1|AAH13163.2| 254|Homo sapiens DCUN1D1 protein protein.
Length = 254
Score = 41.5 bits (93), Expect = 0.004
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = -2
Query: 737 FCEFVGNDLSSYDDTEAWPSLFDDFVEYENDQV 639
F + +D+S+YD+ AWP L DDFVE+ Q+
Sbjct: 214 FSTMIADDMSNYDEEGAWPVLIDDFVEFARPQI 246
>BC009478-1|AAH09478.1| 259|Homo sapiens DCN1, defective in cullin
neddylation 1, domain containing 1 (S. cerevisiae)
protein.
Length = 259
Score = 41.5 bits (93), Expect = 0.004
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = -2
Query: 737 FCEFVGNDLSSYDDTEAWPSLFDDFVEYENDQV 639
F + +D+S+YD+ AWP L DDFVE+ Q+
Sbjct: 219 FSTMIADDMSNYDEEGAWPVLIDDFVEFARPQI 251
>AK025764-1|BAB15235.1| 137|Homo sapiens protein ( Homo sapiens
cDNA: FLJ22111 fis, clone HEP18290. ).
Length = 137
Score = 41.5 bits (93), Expect = 0.004
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = -2
Query: 737 FCEFVGNDLSSYDDTEAWPSLFDDFVEYENDQV 639
F + +D+S+YD+ AWP L DDFVE+ Q+
Sbjct: 97 FSTMIADDMSNYDEEGAWPVLIDDFVEFARPQI 129
>AF456426-1|AAL78673.1| 259|Homo sapiens squamous cell
carcinoma-related oncoprotein protein.
Length = 259
Score = 41.5 bits (93), Expect = 0.004
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = -2
Query: 737 FCEFVGNDLSSYDDTEAWPSLFDDFVEYENDQV 639
F + +D+S+YD+ AWP L DDFVE+ Q+
Sbjct: 219 FSTMIADDMSNYDEEGAWPVLIDDFVEFARPQI 251
>AF456425-1|AAL78672.1| 259|Homo sapiens squamous cell
carcinoma-related oncoprotein protein.
Length = 259
Score = 41.5 bits (93), Expect = 0.004
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = -2
Query: 737 FCEFVGNDLSSYDDTEAWPSLFDDFVEYENDQV 639
F + +D+S+YD+ AWP L DDFVE+ Q+
Sbjct: 219 FSTMIADDMSNYDEEGAWPVLIDDFVEFARPQI 251
>AF292100-1|AAG00606.2| 259|Homo sapiens RP42 protein protein.
Length = 259
Score = 41.5 bits (93), Expect = 0.004
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = -2
Query: 737 FCEFVGNDLSSYDDTEAWPSLFDDFVEYENDQV 639
F + +D+S+YD+ AWP L DDFVE+ Q+
Sbjct: 219 FSTMIADDMSNYDEEGAWPVLIDDFVEFARPQI 251
>BC056669-1|AAH56669.1| 259|Homo sapiens DCN1, defective in cullin
neddylation 1, domain containing 2 (S. cerevisiae)
protein.
Length = 259
Score = 40.3 bits (90), Expect = 0.008
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = -2
Query: 737 FCEFVGNDLSSYDDTEAWPSLFDDFVEY 654
F + +D+S+YD+ AWP L DDFVEY
Sbjct: 219 FGNMIADDMSNYDEEGAWPVLIDDFVEY 246
>AL442125-1|CAI39777.1| 126|Homo sapiens DCN1, defective in cullin
neddylation 1, domain containing 2 (S. cerevisiae)
protein.
Length = 126
Score = 40.3 bits (90), Expect = 0.008
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = -2
Query: 737 FCEFVGNDLSSYDDTEAWPSLFDDFVEY 654
F + +D+S+YD+ AWP L DDFVEY
Sbjct: 86 FGNMIADDMSNYDEEGAWPVLIDDFVEY 113
>AL160251-1|CAI39428.1| 126|Homo sapiens DCN1, defective in cullin
neddylation 1, domain containing 2 (S. cerevisiae)
protein.
Length = 126
Score = 40.3 bits (90), Expect = 0.008
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = -2
Query: 737 FCEFVGNDLSSYDDTEAWPSLFDDFVEY 654
F + +D+S+YD+ AWP L DDFVEY
Sbjct: 86 FGNMIADDMSNYDEEGAWPVLIDDFVEY 113
>AK000099-1|BAA90944.1| 126|Homo sapiens protein ( Homo sapiens
cDNA FLJ20092 fis, clone COL04215. ).
Length = 126
Score = 40.3 bits (90), Expect = 0.008
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = -2
Query: 737 FCEFVGNDLSSYDDTEAWPSLFDDFVEY 654
F + +D+S+YD+ AWP L DDFVEY
Sbjct: 86 FGNMIADDMSNYDEEGAWPVLIDDFVEY 113
>D87466-1|BAA13405.1| 309|Homo sapiens KIAA0276 protein.
Length = 309
Score = 37.9 bits (84), Expect = 0.044
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = -2
Query: 737 FCEFVGNDLSSYDDTEAWPSLFDDFVEYENDQ 642
F + DLS+YD+ AWP L D+FVE+ D+
Sbjct: 275 FSRTINLDLSNYDEDGAWPVLLDEFVEWYKDK 306
>BX537944-1|CAD97912.1| 315|Homo sapiens hypothetical protein
protein.
Length = 315
Score = 37.9 bits (84), Expect = 0.044
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = -2
Query: 737 FCEFVGNDLSSYDDTEAWPSLFDDFVEYENDQ 642
F + DLS+YD+ AWP L D+FVE+ D+
Sbjct: 281 FSRTINLDLSNYDEDGAWPVLLDEFVEWYKDK 312
>BC053897-1|AAH53897.2| 257|Homo sapiens DCN1, defective in cullin
neddylation 1, domain containing 4 (S. cerevisiae)
protein.
Length = 257
Score = 37.9 bits (84), Expect = 0.044
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = -2
Query: 737 FCEFVGNDLSSYDDTEAWPSLFDDFVEYENDQ 642
F + DLS+YD+ AWP L D+FVE+ D+
Sbjct: 223 FSRTINLDLSNYDEDGAWPVLLDEFVEWYKDK 254
>BC004169-1|AAH04169.1| 237|Homo sapiens DCN1, defective in cullin
neddylation 1, domain containing 5 (S. cerevisiae)
protein.
Length = 237
Score = 36.7 bits (81), Expect = 0.10
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = -2
Query: 737 FCEFVGNDLSSYDDTEAWPSLFDDFVEYE 651
F V DLS+YD+ AWP L D+FVE++
Sbjct: 203 FSRTVHADLSNYDEDGAWPVLLDEFVEWQ 231
>AK056993-1|BAB71336.1| 237|Homo sapiens protein ( Homo sapiens
cDNA FLJ32431 fis, clone SKMUS2001147, weakly similar to
Mus musculus RP42 mRNA. ).
Length = 237
Score = 36.7 bits (81), Expect = 0.10
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = -2
Query: 737 FCEFVGNDLSSYDDTEAWPSLFDDFVEYE 651
F V DLS+YD+ AWP L D+FVE++
Sbjct: 203 FSRTVHADLSNYDEDGAWPVLLDEFVEWQ 231
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,371,975
Number of Sequences: 237096
Number of extensions: 1655694
Number of successful extensions: 2155
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2155
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10203625794
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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