Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10g15
(819 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY075303-1|AAL68170.1| 334|Drosophila melanogaster AT31457p pro... 49 9e-06
AE013599-1616|AAF58439.2| 334|Drosophila melanogaster CG13322-P... 49 9e-06
AE013599-1615|AAM68619.1| 334|Drosophila melanogaster CG13322-P... 49 9e-06
AE013599-1614|AAM68618.1| 334|Drosophila melanogaster CG13322-P... 49 9e-06
AY118412-1|AAM48441.1| 288|Drosophila melanogaster RE66446p pro... 39 0.007
AE014296-2535|AAF49617.2| 288|Drosophila melanogaster CG7427-PA... 39 0.007
BT012470-1|AAS93741.1| 248|Drosophila melanogaster RE34983p pro... 33 0.36
AE014296-3319|AAN11626.2| 248|Drosophila melanogaster CG6597-PB... 33 0.36
AE014296-3318|AAF49037.2| 248|Drosophila melanogaster CG6597-PA... 33 0.36
>AY075303-1|AAL68170.1| 334|Drosophila melanogaster AT31457p
protein.
Length = 334
Score = 48.8 bits (111), Expect = 9e-06
Identities = 18/25 (72%), Positives = 22/25 (88%)
Frame = -2
Query: 716 DLSSYDDTEAWPSLFDDFVEYENDQ 642
D+ +YDDTEAWPSLFDDFV+YE +
Sbjct: 279 DIQNYDDTEAWPSLFDDFVDYEKSR 303
Score = 43.2 bits (97), Expect = 4e-04
Identities = 17/28 (60%), Positives = 22/28 (78%)
Frame = -1
Query: 807 LNYLEKNPQIRGIPKDTWYMFLNFL*VC 724
+++LEK+P IR IPKDTW M+LNF C
Sbjct: 251 IHFLEKHPNIRRIPKDTWNMYLNFTEQC 278
>AE013599-1616|AAF58439.2| 334|Drosophila melanogaster CG13322-PC,
isoform C protein.
Length = 334
Score = 48.8 bits (111), Expect = 9e-06
Identities = 18/25 (72%), Positives = 22/25 (88%)
Frame = -2
Query: 716 DLSSYDDTEAWPSLFDDFVEYENDQ 642
D+ +YDDTEAWPSLFDDFV+YE +
Sbjct: 279 DIQNYDDTEAWPSLFDDFVDYEKSR 303
Score = 43.2 bits (97), Expect = 4e-04
Identities = 17/28 (60%), Positives = 22/28 (78%)
Frame = -1
Query: 807 LNYLEKNPQIRGIPKDTWYMFLNFL*VC 724
+++LEK+P IR IPKDTW M+LNF C
Sbjct: 251 IHFLEKHPNIRRIPKDTWNMYLNFTEQC 278
>AE013599-1615|AAM68619.1| 334|Drosophila melanogaster CG13322-PB,
isoform B protein.
Length = 334
Score = 48.8 bits (111), Expect = 9e-06
Identities = 18/25 (72%), Positives = 22/25 (88%)
Frame = -2
Query: 716 DLSSYDDTEAWPSLFDDFVEYENDQ 642
D+ +YDDTEAWPSLFDDFV+YE +
Sbjct: 279 DIQNYDDTEAWPSLFDDFVDYEKSR 303
Score = 43.2 bits (97), Expect = 4e-04
Identities = 17/28 (60%), Positives = 22/28 (78%)
Frame = -1
Query: 807 LNYLEKNPQIRGIPKDTWYMFLNFL*VC 724
+++LEK+P IR IPKDTW M+LNF C
Sbjct: 251 IHFLEKHPNIRRIPKDTWNMYLNFTEQC 278
>AE013599-1614|AAM68618.1| 334|Drosophila melanogaster CG13322-PA,
isoform A protein.
Length = 334
Score = 48.8 bits (111), Expect = 9e-06
Identities = 18/25 (72%), Positives = 22/25 (88%)
Frame = -2
Query: 716 DLSSYDDTEAWPSLFDDFVEYENDQ 642
D+ +YDDTEAWPSLFDDFV+YE +
Sbjct: 279 DIQNYDDTEAWPSLFDDFVDYEKSR 303
Score = 43.2 bits (97), Expect = 4e-04
Identities = 17/28 (60%), Positives = 22/28 (78%)
Frame = -1
Query: 807 LNYLEKNPQIRGIPKDTWYMFLNFL*VC 724
+++LEK+P IR IPKDTW M+LNF C
Sbjct: 251 IHFLEKHPNIRRIPKDTWNMYLNFTEQC 278
>AY118412-1|AAM48441.1| 288|Drosophila melanogaster RE66446p
protein.
Length = 288
Score = 39.1 bits (87), Expect = 0.007
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = -2
Query: 737 FCEFVGNDLSSYDDTEAWPSLFDDFVEY--ENDQVNQNVTKSSIKIQD*RSVKSSSR 573
F + + +S+YD AWP L DDFVE+ END + ++ + +S Q S SSS+
Sbjct: 215 FATNIDDRMSNYDSEGAWPVLIDDFVEWCQENDHLKEDSSPAS-GYQQQSSASSSSQ 270
>AE014296-2535|AAF49617.2| 288|Drosophila melanogaster CG7427-PA
protein.
Length = 288
Score = 39.1 bits (87), Expect = 0.007
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = -2
Query: 737 FCEFVGNDLSSYDDTEAWPSLFDDFVEY--ENDQVNQNVTKSSIKIQD*RSVKSSSR 573
F + + +S+YD AWP L DDFVE+ END + ++ + +S Q S SSS+
Sbjct: 215 FATNIDDRMSNYDSEGAWPVLIDDFVEWCQENDHLKEDSSPAS-GYQQQSSASSSSQ 270
>BT012470-1|AAS93741.1| 248|Drosophila melanogaster RE34983p
protein.
Length = 248
Score = 33.5 bits (73), Expect = 0.36
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = -2
Query: 737 FCEFVGNDLSSYDDTEAWPSLFDDFVEYENDQVNQ 633
F + DLS+YD AWP + D+FVE+ Q +Q
Sbjct: 206 FSRTISIDLSNYDIDGAWPVMLDEFVEWLRLQRSQ 240
>AE014296-3319|AAN11626.2| 248|Drosophila melanogaster CG6597-PB,
isoform B protein.
Length = 248
Score = 33.5 bits (73), Expect = 0.36
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = -2
Query: 737 FCEFVGNDLSSYDDTEAWPSLFDDFVEYENDQVNQ 633
F + DLS+YD AWP + D+FVE+ Q +Q
Sbjct: 206 FSRTISIDLSNYDIDGAWPVMLDEFVEWLRLQRSQ 240
>AE014296-3318|AAF49037.2| 248|Drosophila melanogaster CG6597-PA,
isoform A protein.
Length = 248
Score = 33.5 bits (73), Expect = 0.36
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = -2
Query: 737 FCEFVGNDLSSYDDTEAWPSLFDDFVEYENDQVNQ 633
F + DLS+YD AWP + D+FVE+ Q +Q
Sbjct: 206 FSRTISIDLSNYDIDGAWPVMLDEFVEWLRLQRSQ 240
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,512,499
Number of Sequences: 53049
Number of extensions: 538889
Number of successful extensions: 1029
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3860063376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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