Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10g15
         (819 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL024499-2|CAB54260.2|  242|Caenorhabditis elegans Hypothetical ...    38   0.009
AL024499-1|CAB54261.2|  295|Caenorhabditis elegans Hypothetical ...    38   0.009
AF025457-10|AAB70972.1|  148|Caenorhabditis elegans Hypothetical...    29   5.3  
AF025457-7|AAB70967.1|  431|Caenorhabditis elegans Hypothetical ...    29   5.3  
Z81475-2|CAB03908.1|  384|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z81475-1|CAB03912.1|  384|Caenorhabditis elegans Hypothetical pr...    28   7.0  
AF003145-3|AAB57717.1|  751|Caenorhabditis elegans Cpeb polya bi...    28   9.2  

>AL024499-2|CAB54260.2|  242|Caenorhabditis elegans Hypothetical
           protein H38K22.2b protein.
          Length = 242

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = -2

Query: 716 DLSSYDDTEAWPSLFDDFVEYENDQVN 636
           DLS YDD  AWP L D FV+Y  + +N
Sbjct: 197 DLSDYDDEGAWPVLIDQFVDYCRENLN 223


>AL024499-1|CAB54261.2|  295|Caenorhabditis elegans Hypothetical
           protein H38K22.2a protein.
          Length = 295

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = -2

Query: 716 DLSSYDDTEAWPSLFDDFVEYENDQVN 636
           DLS YDD  AWP L D FV+Y  + +N
Sbjct: 250 DLSDYDDEGAWPVLIDQFVDYCRENLN 276


>AF025457-10|AAB70972.1|  148|Caenorhabditis elegans Hypothetical
           protein C08E3.11 protein.
          Length = 148

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 737 FCEFVGNDLSSYDDTEAW 684
           FC  VGND+ SY+D + W
Sbjct: 33  FCRNVGNDVMSYNDFDFW 50


>AF025457-7|AAB70967.1|  431|Caenorhabditis elegans Hypothetical
           protein C08E3.8 protein.
          Length = 431

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 737 FCEFVGNDLSSYDDTEAW 684
           FC  VGND+ SY+D + W
Sbjct: 33  FCRNVGNDVMSYNDFDFW 50


>Z81475-2|CAB03908.1|  384|Caenorhabditis elegans Hypothetical
           protein C24H11.2 protein.
          Length = 384

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 24  FRYLPLCTIISRRKIC 71
           F Y+PLC I+S+R +C
Sbjct: 216 FSYMPLCAIVSKRILC 231


>Z81475-1|CAB03912.1|  384|Caenorhabditis elegans Hypothetical
           protein C24H11.1 protein.
          Length = 384

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 24  FRYLPLCTIISRRKIC 71
           F Y+PLC I+S+R +C
Sbjct: 216 FSYMPLCAIVSKRILC 231


>AF003145-3|AAB57717.1|  751|Caenorhabditis elegans Cpeb polya
           binding family protein 3 protein.
          Length = 751

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -1

Query: 285 FSVNFTRAMTITEFISTLAML*FNSTVNDCFIRRSTCYKLSFCRN 151
           ++  F + + I  F+ +   +  NS    CF R   C+K  +C N
Sbjct: 504 YTSKFRKRVQIDPFLESTCCMVCNSQSAHCFCRNKNCFKY-YCHN 547


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,931,018
Number of Sequences: 27780
Number of extensions: 302422
Number of successful extensions: 782
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)