Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10g15
         (819 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    25   0.64 
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   2.6  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   4.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   4.5  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    23   4.5  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    22   7.8  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 25.4 bits (53), Expect = 0.64
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 600 LKVCQIQQ*VLCRLVLKYDIETDERIF 520
           LK C  +  ++ R+  KYD++TD  IF
Sbjct: 411 LKACSSEV-MMLRMARKYDVQTDSIIF 436


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 194 KQSFTVLLNYNIASVEINSVIV 259
           KQ   VL+++NI   +INS+ V
Sbjct: 6   KQGLPVLVDFNIFVADINSINV 27


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +1

Query: 706 LLRSFPTNSQKI*KHVPCIFWNASDLWVLLKVI 804
           +L+ FP+NS      +   FW     W L K +
Sbjct: 302 MLQGFPSNSWVAINELQDSFWLEQYSWALFKAM 334


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +1

Query: 706 LLRSFPTNSQKI*KHVPCIFWNASDLWVLLKVI 804
           +L+ FP+NS      +   FW     W L K +
Sbjct: 270 MLQGFPSNSWVAINELQDSFWLEQYSWALFKAM 302


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 695 CHHSC*DHFQQTHKKFKNMYHVSF 766
           C++S   HFQ  H++   +Y   F
Sbjct: 17  CYYSLKRHFQDKHEQSDTLYVCEF 40


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 766 KRYMVHVFKFFVSLLEMISAAMMTRKHG 683
           KRY ++  + F   ++ +   +MTRK G
Sbjct: 7   KRYKLYSSENFDDFMKALGVGIMTRKVG 34


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,062
Number of Sequences: 438
Number of extensions: 3996
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)