Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10g14
(838 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 32 0.12
SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr 3|||M... 30 0.35
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo... 27 2.5
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 27 3.3
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 27 3.3
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|... 27 4.4
SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|ch... 27 4.4
SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase |Schizosaccharom... 27 4.4
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 26 7.6
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 26 7.6
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||... 26 7.6
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 26 7.6
SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|ch... 26 7.6
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 26 7.6
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 31.9 bits (69), Expect = 0.12
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -2
Query: 693 CQKRSRRSYAETCHRSTRVCNEPLLKSISKTRWSRIESKRKHQK 562
C KR R+Y H +T P SI K ++R KR+H++
Sbjct: 577 CNKRFTRAYNLKSHMNTHTNYRPFQCSICKKSFARQHDKRRHEQ 620
>SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr
3|||Manual
Length = 325
Score = 30.3 bits (65), Expect = 0.35
Identities = 17/73 (23%), Positives = 36/73 (49%)
Frame = -1
Query: 295 TNVNAAGATNYALALHRFGVMVQTCVKEMDPFDAVLVMRLHTKKKEIMVVPDPSFNIIVL 116
TNVN + + L+ G V+ DP+ + V+ L+T++ E ++ S+ I L
Sbjct: 99 TNVNLSALADLILSQPLLGSTVKVDGNNSDPYAMLSVINLNTRRDEPVIKQLTSYIISRL 158
Query: 115 QQARQKIKKNSEK 77
++ +++ +K
Sbjct: 159 AKSNSRLENELQK 171
>SPCC126.09 |||vacuolar membrane zinc transporter
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 418
Score = 27.5 bits (58), Expect = 2.5
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +2
Query: 218 DASLYHNTESVQSQGVVRGTGCIHICHYRTSVFIRHDNALNRFVFHYSVY 367
D+S H+++SV V + + C CH S F H + +SVY
Sbjct: 214 DSSARHSSDSVHEYLVKKPSNCDCECHAHFSSFPTHSGTPDDIEHIHSVY 263
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +3
Query: 576 VSILYATNVSSISISVTARCILALSGGRFLHRTCATVSGNVYI 704
+ +L+AT SI +++ A+ ++ + +F +T +SG YI
Sbjct: 544 LKVLFATETFSIGLNMPAKTVVFTNVRKFDGKTFRWISGGEYI 586
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 27.1 bits (57), Expect = 3.3
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -1
Query: 415 EWLVNLSAKINNINPVIDRI 356
EW + SA +N I+PV+D++
Sbjct: 852 EWSAHYSALVNRISPVLDKL 871
>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 712
Score = 26.6 bits (56), Expect = 4.4
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +2
Query: 194 CVERIHFLDASLYHNTESVQSQGVVRGTGCIHICHYRTSVFIRHDNALNRF 346
C IH+LDA +NT V++ V+ CIH V +H + ++F
Sbjct: 340 CKGVIHYLDAHFVNNTGEVET---VKNAICIH--EEDDGVLFKHSDFRDKF 385
>SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 402
Score = 26.6 bits (56), Expect = 4.4
Identities = 20/77 (25%), Positives = 36/77 (46%)
Frame = +2
Query: 131 EGRIRDHHDFFLFRMQTHY*YCVERIHFLDASLYHNTESVQSQGVVRGTGCIHICHYRTS 310
+GRIRD H + L +++H ++R F +A N + GV + G H ++
Sbjct: 278 QGRIRDRHFWLLHGLKSHGSLEIDRGAF-EAITRTNRAGLLPVGVTKVHG--HFSAHQAV 334
Query: 311 VFIRHDNALNRFVFHYS 361
I + + R + +YS
Sbjct: 335 TVIYNGEEIGRALVNYS 351
>SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 236
Score = 26.6 bits (56), Expect = 4.4
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = -1
Query: 814 KCQMPKEFKEQVIKTVTRIEESHNVVGVLYLSKDAVQMYTLPETVAQVLCRNLPPLNASM 635
+ QMP E K Q+ V E+++ + LY + V P +LC LPPL ++
Sbjct: 161 QAQMPLELKCQLADIVI---ENNSDLETLYENIHNVLPLITPSYFFTLLCLILPPLQITL 217
Query: 634 Q 632
Q
Sbjct: 218 Q 218
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 25.8 bits (54), Expect = 7.6
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -2
Query: 702 CTHCQKRSRRSYAETCH-RSTRVCNEPLLKSISKTRWSRIESKRKHQK 562
C C K+ +RS H RS +P + I R+SR ++ R+H++
Sbjct: 425 CPECSKKFKRSEHLRRHIRSLHTSEKPFV-CICGKRFSRRDNLRQHER 471
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 799 KEFKEQVIKTVTRIEESHNVVG 734
K F+EQV K ++IE H V+G
Sbjct: 31 KAFREQVEKHFSKIERLHQVLG 52
>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 7.6
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Frame = -1
Query: 697 TLPETVAQVLCRNLPPLN--ASMQRAVTEIDIEDTLVAYRIETKTSEVLVASDLDFTACV 524
T+P+ V + N+ L S +++ + +E+ + T S +DFT C
Sbjct: 234 TIPKRVITSMHNNIAELYNPISCIKSLPYLSLEEAKTTLEVHTDRSLFFSGQIIDFTICY 293
Query: 523 VHRIKRK 503
H R+
Sbjct: 294 THNHHRR 300
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 148 VPDPSFNIIVLQQARQKIKKNSEKQFIS 65
V DP FNIIV + Q + N+ K+ I+
Sbjct: 405 VVDPEFNIIVSDRWLQPLGTNNSKEVIT 432
>SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 272
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 614 RYRRHVGRV*NRNENIRSFSGIR 546
R HVGR NR+ N+ S SG R
Sbjct: 82 RRNNHVGRWANRHSNVSSSSGSR 104
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 25.8 bits (54), Expect = 7.6
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -2
Query: 615 SISKTRWSRIESKRKHQK-F*WHQILISRRASSTGSRGN 502
SI KT W E R+H K + +S+ SS SR N
Sbjct: 205 SIEKTNWIEAEFTRRHTKRKEKERACLSQNQSSNASRAN 243
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,357,424
Number of Sequences: 5004
Number of extensions: 69561
Number of successful extensions: 198
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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