Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10g14
         (838 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0475 + 18182412-18183270,18183384-18183880                       29   3.5  
05_05_0394 - 24638466-24638723,24638849-24638914,24639437-246394...    29   3.5  
12_02_0521 - 19955475-19956076,19957146-19958403                       29   4.6  
01_06_0957 - 33352904-33353212,33353316-33353465,33353544-333536...    28   8.0  

>10_08_0475 + 18182412-18183270,18183384-18183880
          Length = 451

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = -1

Query: 247 RFGVMVQTCVKEMDPFDAVLVMRLHTKKKEIMVVPDPSFNIIVLQQARQKIKKNS 83
           R+ V+V   +  + PF AVL+   H+KK  ++ +          +QA +K+   S
Sbjct: 251 RWSVVVIALIAALVPFAAVLIFLHHSKKSRVVRLGGGDIKDKAAEQAGKKVSSGS 305


>05_05_0394 -
           24638466-24638723,24638849-24638914,24639437-24639463,
           24640054-24640122
          Length = 139

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +3

Query: 540 SRSDATKTSDVFVSILYATNVSSISISVTARCILA 644
           S +DA  TSDV  +   A    S+S SV A C LA
Sbjct: 91  SAADAVPTSDVARTAAAAATARSLSFSVAAICFLA 125


>12_02_0521 - 19955475-19956076,19957146-19958403
          Length = 619

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = -3

Query: 263 RLGSAQIRCYGTNLRQGNGSFRRSTSNAFAYEKERNHGGPGSVL 132
           ++GS +++  G+N  QG+ S   S S+   +  E NHG   +V+
Sbjct: 54  QVGSPEMQEPGSNSDQGHDSATESASSRETWPAEPNHGSAAAVV 97


>01_06_0957 -
           33352904-33353212,33353316-33353465,33353544-33353684,
           33354116-33354709
          Length = 397

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 15/41 (36%), Positives = 26/41 (63%)
 Frame = -1

Query: 613 DIEDTLVAYRIETKTSEVLVASDLDFTACVVHRIKRKHKKN 491
           DIE   V Y + T  +++ +A  + FTAC+VH+ ++ H +N
Sbjct: 202 DIEPCGVTYWLIT-IAQIPIA--VAFTACIVHQKRKSHAQN 239


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,965,842
Number of Sequences: 37544
Number of extensions: 426386
Number of successful extensions: 1098
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)