Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10g12
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    27   4.5  
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|...    27   4.5  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    27   4.5  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   4.5  
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    26   5.9  

>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 748 CSQGPDFILFLSHQIVRISRHDIVIIVLW 834
           CS     I F+SH+  R+S+  + I+++W
Sbjct: 544 CSLNFGKISFISHEFYRVSKRFLDILLIW 572


>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 342

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = -1

Query: 831 EDYYYDIVTRDPDDLMREKENEVRALRAFQADCAEDVQVKPDLVVNLKSGD-WQTEDVSL 655
           ++Y+Y  V      L  + E+ VR LR    +CA+  Q   +++V+ ++ + W+  DV L
Sbjct: 82  KNYHYYEVAATCIFLATKVEDSVRKLRDIVINCAKVAQKNSNVLVDEQTKEYWRWRDVIL 141


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 19/71 (26%), Positives = 29/71 (40%)
 Frame = +3

Query: 81  QXHNSTNWCRYIIGRKTLLFLGTKLRILAI*FLCNFENTVHKQ*IASKLVAVTKFCCDVQ 260
           Q +NS+N      G  T       +R LA+ FL NF +  +   +     A+       Q
Sbjct: 165 QIYNSSNELEQFGGESTYFITKHGVRTLAMGFLFNFSSNANNTVVTPVETAIKSEWYQQQ 224

Query: 261 ISTI*IDLMEL 293
           I+   +DL  L
Sbjct: 225 INRTDVDLFLL 235


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 20/75 (26%), Positives = 32/75 (42%)
 Frame = +2

Query: 524  SSISFSAMILSFISGILDMASFILNTPCAVMSPSFISTQRAHFLRDTSSVCQSPLFKLTT 703
            S  SF ++   F+S ++  A +IL+ P      SFI     HF + T++           
Sbjct: 1975 SIFSFFSLFWWFLSRVVQ-ARYILSLPFFFFGISFILVAITHFFQKTTACSVIQHIAAYV 2033

Query: 704  KSGLTWTSSAQSAWN 748
             +  + T S   AWN
Sbjct: 2034 YAISSSTGSLYFAWN 2048


>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = -1

Query: 657 LKKWALCVLMKLGLMTAQGVFKMNEAMSKIPDMNDKI 547
           +K+W LCV++       Q +F +   M  + D++ ++
Sbjct: 561 MKEWFLCVIVDNDFQNGQSLFDVFNKMRSLKDIHPEL 597


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,343,755
Number of Sequences: 5004
Number of extensions: 68355
Number of successful extensions: 161
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)