Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10g07
         (828 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    25   9.9  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    25   9.9  
SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|c...    25   9.9  

>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -2

Query: 674 YLTTV*QRNTPAYTTWLGSSNPS 606
           YL     +N  AYT WL SSN S
Sbjct: 317 YLIPGTSKNWEAYTAWLTSSNDS 339


>SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1150

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
 Frame = -1

Query: 765  RDLTITFKIPQYF---SEWTLPEA--RCSGLAIQKVLDYRITKKHTCIHNLARIQQP 610
            R++++    P  F   + WT  E   RC  +  Q  LD R T KHT   +  R +QP
Sbjct: 1042 REISLLLDDPTLFYNNAAWTSKELYKRCEEIISQMSLDERNTPKHTA--STKRKRQP 1096


>SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = -3

Query: 598 KQSSNQLNQCVEIRMPMSINSNIPD*FTQXXXXXXXXLYQIYSVVLRKTENEIKLTLE 425
           KQS+ + N CV +    ++       F           Y  YSV L+KT NEI + +E
Sbjct: 18  KQSTKRTNPCVYLEAK-AVEQTPATEFNSILQEIISTEYN-YSVDLKKTLNEIIMPIE 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,988,294
Number of Sequences: 5004
Number of extensions: 57457
Number of successful extensions: 154
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)