Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10g07
         (828 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0522 - 21726317-21726634,21727202-21727654,21727771-217280...    31   1.1  
06_01_0350 + 2534422-2535615                                           29   4.5  
02_05_0046 - 25398412-25398594,25399022-25399060,25399896-254003...    29   6.0  

>06_03_0522 -
           21726317-21726634,21727202-21727654,21727771-21728025,
           21728109-21728249,21728404-21728565,21728660-21728820,
           21731598-21731733
          Length = 541

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = -2

Query: 608 SCGEAIQ*SIKSVCGDSDADVDKLQHPRLVYTEAVVKET 492
           SC E +   I+ VCGD     + L  PRL Y  AV  ET
Sbjct: 369 SCQERLYQEIREVCGDETVTEEHL--PRLPYLNAVFHET 405


>06_01_0350 + 2534422-2535615
          Length = 397

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -3

Query: 469 VVLRKTENEIKLTLEALGSQWRAFACLHRKRGPPPL 362
           V+LR   +  ++ L A+   WR+ A L RK  PPPL
Sbjct: 23  VLLRLPSHGDRVRLRAVCRPWRSSARLERKLLPPPL 58


>02_05_0046 - 25398412-25398594,25399022-25399060,25399896-25400360,
            25400758-25400816,25400920-25401748,25402554-25402898,
            25402973-25403435,25403537-25403640,25403692-25403901,
            25404933-25405088,25405774-25406052,25406237-25406986,
            25407141-25407232,25407977-25408361,25408672-25408752,
            25409196-25409354,25409399-25409506,25409604-25409666,
            25409764-25409835,25409932-25410366
          Length = 1758

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -2

Query: 782  HVRVRSVTLLSPSRSRSTFLSGRCRKRGALAW 687
            H  V   T+ SP  SRST L G C +     W
Sbjct: 928  HEEVDEDTISSPRISRSTILRGSCMREKRFVW 959


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,201,567
Number of Sequences: 37544
Number of extensions: 377631
Number of successful extensions: 914
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)