Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10g02
(274 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|c... 28 0.27
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 25 1.5
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S... 25 2.5
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 24 3.4
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 3.4
SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy... 24 4.4
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 23 5.9
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 23 5.9
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc... 23 5.9
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 23 7.8
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc... 23 7.8
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 23 7.8
>SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 315
Score = 27.9 bits (59), Expect = 0.27
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -3
Query: 143 LLCQSSVPPTQR--CYPVNPCINIYSCYTQIM*RNGAISIVNLK 18
LLC P R +P+NP + SC+ + RN S VN++
Sbjct: 88 LLCYFETPFFMRKELFPLNPHLKYTSCFPLLPLRNDKASTVNIE 131
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 25.4 bits (53), Expect = 1.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 72 LLHSNYVTQWSDFYSEFKNG*KH 4
LL S ++ ++ D YS KNG KH
Sbjct: 294 LLESLFLDRYVDHYSYLKNGLKH 316
>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
Klp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 24.6 bits (51), Expect = 2.5
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +2
Query: 86 CKDLQDSTVVLVARCSGKGAEMQVHRSDDNPEVNRLVDNN 205
CK Q+S +V+ G+GA+M D+ ++ + + N
Sbjct: 531 CKTFQNSISHIVSSFKGEGADMYADMLQDDVDLLKSIIEN 570
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 24.2 bits (50), Expect = 3.4
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -2
Query: 138 LPEQRATNTTVLSCKSLHQHIQLLHSNYVTQWSDF 34
+P +N VL CK L + + LH++ ++Q +DF
Sbjct: 1241 VPSNVKSNILVLLCKLLPTNTKWLHAS-ISQTNDF 1274
>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 24.2 bits (50), Expect = 3.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -2
Query: 96 KSLHQHIQLLHSNYVTQW 43
+S H +I L+SNY T W
Sbjct: 166 QSAHPYISSLNSNYPTTW 183
>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 215
Score = 23.8 bits (49), Expect = 4.4
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -1
Query: 202 IVHQS-VHLRIVVRSVDLHLRSFARAACHQHNGAIL*ILASTYTAVTLK 59
I+H S VH+ + S D+ + ++ +A H H + AST K
Sbjct: 63 IIHDSAVHIAPLPSSCDIDFKDYSTSAFHLHFSPLTPNHASTEAVSNFK 111
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 23.4 bits (48), Expect = 5.9
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +2
Query: 86 CKDLQDSTVVLVARCSGKGAEMQV 157
C+ +QD+ V++V +G G Q+
Sbjct: 106 CQQIQDNRVIVVVGETGSGKSTQI 129
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 23.4 bits (48), Expect = 5.9
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -3
Query: 197 PPVCSPPDCRPICGPASPLLCQSSVP 120
PPV +PP P P+ P S+P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLP 440
>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
polymerase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1120
Score = 23.4 bits (48), Expect = 5.9
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -3
Query: 143 LLCQSSVPPTQR 108
LLCQ+S+ PTQR
Sbjct: 108 LLCQASLNPTQR 119
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 23.0 bits (47), Expect = 7.8
Identities = 8/29 (27%), Positives = 16/29 (55%)
Frame = -2
Query: 111 TVLSCKSLHQHIQLLHSNYVTQWSDFYSE 25
T +CK + + +Q+L + ++ DF E
Sbjct: 678 TKSNCKQMEEEMQVLREGHESEIKDFIEE 706
>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 23.0 bits (47), Expect = 7.8
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -3
Query: 197 PPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNPCINIY 75
PP + P +C + L C +S P T R + +N I ++
Sbjct: 71 PPTLTGPTSNRVCNALALLQCIASHPET-RIHFLNAHITLF 110
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 23.0 bits (47), Expect = 7.8
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = -2
Query: 141 PLPEQRATNTTVLSCKSLHQHIQ 73
PLPE+ + + C L+ H+Q
Sbjct: 395 PLPEEEMSKLHIERCARLYPHMQ 417
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,085,097
Number of Sequences: 5004
Number of extensions: 20105
Number of successful extensions: 64
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 59659786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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