Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10g02
(274 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871 35 0.008
04_04_1298 + 32448759-32448870,32449125-32449210,32449309-32449521 29 0.51
02_04_0413 + 22681957-22682035,22682253-22682788 28 1.2
12_02_0046 + 12830974-12832386 27 1.5
05_01_0251 + 1901709-1901864,1901968-1901999,1902534-1902664,190... 27 1.5
04_03_1017 + 21747044-21748051 27 1.5
11_06_0610 - 25449085-25453284 27 2.0
03_01_0515 - 3864796-3865425 27 2.0
08_01_0084 - 613255-613989 27 2.7
08_01_0082 - 588269-588434,590800-591653 27 2.7
02_05_1200 - 34922073-34922273,34922397-34922469,34922976-349230... 27 2.7
01_01_1208 + 9733010-9733114,9733920-9733979,9735254-9736280,973... 27 2.7
07_03_1611 - 28136398-28136572,28137995-28138567,28138762-28139123 26 3.6
06_03_0273 + 19067566-19067791,19068661-19068938,19069434-19070210 26 3.6
09_06_0292 + 22075647-22075691,22077394-22077507,22077602-220778... 26 4.7
09_03_0192 + 13344558-13344942,13345038-13345591 26 4.7
08_01_0083 - 604175-605776 26 4.7
04_04_0187 - 23411085-23411477,23411626-23411631 26 4.7
02_05_1336 + 35773629-35773856,35773931-35774085,35774217-357745... 26 4.7
10_08_0959 - 21813756-21814097,21814462-21814570,21814688-218147... 25 6.3
10_08_0614 - 19238064-19238132,19238381-19238407,19238436-192385... 25 6.3
10_03_0006 + 6929237-6929304,6929581-6929603,6929609-6929710,692... 25 6.3
08_02_1035 - 23840606-23841109,23841194-23841199 25 6.3
08_02_0186 + 13965960-13966424 25 6.3
07_03_1107 - 24024387-24024497,24025799-24026410 25 6.3
07_03_1095 + 23926977-23927657 25 6.3
05_05_0320 + 24085600-24086458,24087025-24087171,24087265-240873... 25 6.3
04_04_0110 + 22840636-22840720,22840958-22841310 25 6.3
04_03_0803 - 19835284-19836050,19836337-19836418 25 6.3
04_03_0801 - 19828175-19828770,19828913-19828994 25 6.3
03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,951... 25 6.3
02_05_0805 - 31859201-31860151 25 6.3
02_05_0690 - 30943184-30943305,30944048-30944459,30944549-309446... 25 6.3
12_01_0382 + 2995263-2995673 25 8.3
12_01_0301 - 2280215-2281154,2281271-2281338 25 8.3
10_03_0035 - 7265037-7265455,7265684-7265812,7265909-7265951,726... 25 8.3
06_03_0541 - 21944696-21944851,21944939-21945142,21945438-219474... 25 8.3
06_01_1090 - 8945909-8946125,8946607-8947562,8947733-8949835 25 8.3
06_01_1088 - 8926361-8927301,8927437-8927705,8927850-8929023,892... 25 8.3
05_05_0288 - 23870228-23870965,23871515-23871584,23871662-238717... 25 8.3
03_02_0994 - 13067254-13067379,13067483-13067521,13067824-130678... 25 8.3
02_01_0435 - 3164421-3165032 25 8.3
>01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871
Length = 177
Score = 35.1 bits (77), Expect = 0.008
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = -3
Query: 206 GYCPPVCSPPDCRPICGPASPLLCQSSVPP 117
G CPP C PP C C P PL C PP
Sbjct: 128 GICPPPCPPP-CPLPCPPPCPLPCPPPCPP 156
>04_04_1298 + 32448759-32448870,32449125-32449210,32449309-32449521
Length = 136
Score = 29.1 bits (62), Expect = 0.51
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -3
Query: 185 SPPDCRPICGPASPLLCQSSVPPTQRCYPVNPCINIYSC 69
S PDC CG SP C + V + +C PC +Y C
Sbjct: 89 SLPDCSHACGACSP--C-NRVMVSFKCSIAEPCPMVYRC 124
>02_04_0413 + 22681957-22682035,22682253-22682788
Length = 204
Score = 27.9 bits (59), Expect = 1.2
Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = -3
Query: 212 KMGYCPPVCSPPDCRPICGPASPLLCQSSVPPTQRC-YPVNPCINIYSC 69
K G C CS +C P P SP CQ PPT C +P PC C
Sbjct: 143 KPGCCCCGCSGGECPP---PPSPP-CQHECPPTPPCEHP--PCSESGCC 185
>12_02_0046 + 12830974-12832386
Length = 470
Score = 27.5 bits (58), Expect = 1.5
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Frame = -3
Query: 197 PPVCSPPDCRPICGP--ASPLLCQSSV---PPTQRCYPVNP 90
PPV SPP + I GP ASP QS V P C P P
Sbjct: 279 PPVPSPPCAKKIRGPVSASPAARQSCVAASAPPPWCVPPPP 319
>05_01_0251 +
1901709-1901864,1901968-1901999,1902534-1902664,
1902740-1902821,1902928-1903054,1903369-1903686,
1903785-1903846,1903988-1904074,1904139-1904195,
1906113-1906197,1906916-1907185,1908158-1908254,
1908390-1908436,1908826-1908939,1909024-1909117,
1909360-1909457,1910356-1910455,1911445-1911521,
1911824-1913122
Length = 1110
Score = 27.5 bits (58), Expect = 1.5
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -3
Query: 248 FLNLQVYKLKK*KMGYCPPVCSPPDCRPICGPASPLLCQSSVPPTQRCYP 99
F+N Q + K GY + P + R P SP+ + + P T++C+P
Sbjct: 807 FVNSQFFSALSRKEGYIHNL--PTEGRRNLVPRSPMTIEEAFPFTRQCWP 854
>04_03_1017 + 21747044-21748051
Length = 335
Score = 27.5 bits (58), Expect = 1.5
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = -3
Query: 197 PPVCSPPDCRPICGPASPLLCQS---SVPPTQRCYP 99
PP + PD P P+SPL + +VPP +R +P
Sbjct: 270 PPRAASPDYTPSTPPSSPLPSAAESFTVPPPRRYHP 305
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 27.1 bits (57), Expect = 2.0
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -3
Query: 197 PPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNP 90
PPV SPP P+ P P+ +S PP P P
Sbjct: 1195 PPVKSPPPPAPVISPPPPV--KSPPPPAPVILPPPP 1228
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -3
Query: 197 PPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNP 90
PP+ SPP P+ P P+ +S PP P P
Sbjct: 1163 PPIKSPPPPAPVISPPPPV--KSPPPPAPVILPPPP 1196
Score = 25.0 bits (52), Expect = 8.3
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -3
Query: 197 PPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNP 90
PPV SPP P+ P P+ +S PP P P
Sbjct: 1179 PPVKSPPPPAPVILPPPPV--KSPPPPAPVISPPPP 1212
Score = 25.0 bits (52), Expect = 8.3
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -3
Query: 197 PPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNP 90
PPV SPP P+ P P+ +S PP P P
Sbjct: 1211 PPVKSPPPPAPVILPPPPV--KSPPPPAPVISPPPP 1244
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -3
Query: 197 PPVCSPPDCRPICGPASPLLCQSSVPP 117
PPV SPP P+ P P + S PP
Sbjct: 1227 PPVKSPPPPAPVISPPPP---EKSPPP 1250
>03_01_0515 - 3864796-3865425
Length = 209
Score = 27.1 bits (57), Expect = 2.0
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -3
Query: 197 PPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNPCINIYS 72
PP SPP P P SP+ +SS PP PV +N Y+
Sbjct: 94 PPAASPPPPPPSPPPPSPV--KSSPPPPPAWSPVTN-VNDYT 132
>08_01_0084 - 613255-613989
Length = 244
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 101 DSTVVLVARCSGKGAEMQVHRSDDNPEVNRLVDN 202
D TV + RC+G+GAE VH + V+ +V +
Sbjct: 102 DGTVTVALRCTGEGAEF-VHAAAPGVAVSDVVSS 134
>08_01_0082 - 588269-588434,590800-591653
Length = 339
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 101 DSTVVLVARCSGKGAEMQVHRSDDNPEVNRLVDN 202
D TV + RC+G+GAE VH + V+ +V +
Sbjct: 104 DGTVTVALRCTGEGAEF-VHAAAPGVAVSDVVSS 136
>02_05_1200 -
34922073-34922273,34922397-34922469,34922976-34923019,
34923107-34923183,34923433-34923529,34923668-34924062,
34926577-34926620,34926702-34926770,34926856-34926956,
34927689-34927856,34927940-34928141,34928269-34928708,
34928786-34928884,34929123-34929263
Length = 716
Score = 26.6 bits (56), Expect = 2.7
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 137 CQSSVPPTQRCYPVNP 90
C SS+PPTQ Y NP
Sbjct: 453 CDSSLPPTQSLYKGNP 468
>01_01_1208 +
9733010-9733114,9733920-9733979,9735254-9736280,
9736332-9736621
Length = 493
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -3
Query: 200 CPPVCSPPDCRPICGPASPLLCQSSVPPTQRCYP 99
CPP P P G +P++ VPP C+P
Sbjct: 351 CPPSWPPQLMVPAPGICTPVVPIPLVPPLWSCFP 384
>07_03_1611 - 28136398-28136572,28137995-28138567,28138762-28139123
Length = 369
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 135 PEQRATNTTVLSCKSLHQHIQLLHSNYVTQWS 40
P++ ATN T L C ++ HSNY W+
Sbjct: 129 PDEEATNHTALPCPG-ELLVEEHHSNYGEPWA 159
>06_03_0273 + 19067566-19067791,19068661-19068938,19069434-19070210
Length = 426
Score = 26.2 bits (55), Expect = 3.6
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 105 LSCKSLHQHIQLLHSNYVTQWSDF 34
+S L H+ +L SN+ QW+ F
Sbjct: 215 VSTSELQLHLDILDSNWTRQWNSF 238
>09_06_0292 +
22075647-22075691,22077394-22077507,22077602-22077841,
22077926-22078003,22078094-22078162,22078420-22078545,
22079108-22079188,22079272-22079460,22079597-22080434,
22082290-22082411,22082482-22082701,22082910-22083055,
22083260-22083566,22083886-22084136,22084294-22084533,
22084930-22085238
Length = 1124
Score = 25.8 bits (54), Expect = 4.7
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -3
Query: 239 LQVYKLKK*KMGYCPPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPV 96
+ ++KL + PP PP RP+ G P + + VP TQ P+
Sbjct: 449 VHIHKLASHSQFHAPPHQPPPPERPVPG-IVPGIVRPPVPTTQITNPM 495
>09_03_0192 + 13344558-13344942,13345038-13345591
Length = 312
Score = 25.8 bits (54), Expect = 4.7
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3
Query: 194 PVCSPPDCRPICGPASPLL 138
P+C P P+C SPLL
Sbjct: 162 PLCIEPPSSPVCNAPSPLL 180
>08_01_0083 - 604175-605776
Length = 533
Score = 25.8 bits (54), Expect = 4.7
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 101 DSTVVLVARCSGKGAEMQVHRSDDNPEVNRLVDN 202
D TV + RC+G+GAE VH + V+ +V +
Sbjct: 102 DLTVTVTLRCTGEGAEF-VHAAAPGVAVSDVVSS 134
>04_04_0187 - 23411085-23411477,23411626-23411631
Length = 132
Score = 25.8 bits (54), Expect = 4.7
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = -3
Query: 203 YCPPVCSPPDCRPICGPASPLLCQSSVPP 117
Y PP PP P C P P + PP
Sbjct: 90 YWPPYWCPPPEDPTCKPCYPRYSYAPPPP 118
>02_05_1336 +
35773629-35773856,35773931-35774085,35774217-35774549,
35774615-35774927,35776992-35777168,35777281-35777397,
35777532-35777698,35777800-35778024,35778127-35778448,
35778542-35778786,35778993-35779131,35779212-35779304,
35779509-35779577
Length = 860
Score = 25.8 bits (54), Expect = 4.7
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +2
Query: 146 EMQVHRSDDNPEVNRLVDNNPFFTFLIYRLVNLKNFTNI 262
E+ + D+N + L D + F + RL +KN T +
Sbjct: 560 ELLYSKEDNNEHIGHLADRSKPIIFSMARLDKIKNITGL 598
>10_08_0959 - 21813756-21814097,21814462-21814570,21814688-21814740,
21814849-21815049,21815320-21815433,21815513-21815671,
21816490-21816849,21816928-21817149,21817967-21818093,
21818887-21819023,21819169-21819292,21819665-21820174,
21820255-21820436,21820812-21820862,21821114-21821266,
21821339-21821437,21821519-21821861,21821957-21822030,
21822105-21823025,21823133-21823257,21823419-21823461,
21823574-21823762,21824814-21825074,21825228-21825387,
21826200-21826363,21826523-21827009,21827090-21827431,
21827519-21827836,21828001-21828041,21828136-21828388,
21829158-21829261,21830198-21830386,21830543-21831196,
21831320-21831610,21831739-21831882,21832107-21832205,
21832549-21832657,21832739-21832923,21833008-21833121,
21833270-21833401,21833483-21833815,21833945-21834436,
21834773-21834847,21834917-21835066,21835143-21835241,
21835463-21835547,21837188-21837375,21837513-21837647,
21837729-21837849,21838127-21838194,21838275-21838370,
21838450-21838554,21838665-21838980,21839053-21839142,
21840011-21840181,21840850-21841010,21841088-21841270,
21841839-21841940,21842515-21842632,21842704-21842798,
21842972-21843022,21843107-21843241,21843333-21843436,
21844249-21844414,21844649-21844773,21845220-21845316
Length = 4181
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 27 HYRNRSIALHNLSVTAVYVDARI 95
H + RS+ L+ L VTA+ +A I
Sbjct: 2615 HLKGRSVRLYRLMVTAIIANAEI 2637
>10_08_0614 -
19238064-19238132,19238381-19238407,19238436-19238510,
19238637-19239317,19239423-19239554,19239676-19239723,
19239828-19239878,19240015-19240134,19241121-19241261,
19241701-19241865,19241981-19242160,19242314-19242445,
19242536-19242643,19242779-19242883,19243217-19243321,
19243407-19243463,19243991-19244010,19244299-19244377,
19245021-19245080,19245562-19245615,19246535-19246600,
19246938-19246990,19247361-19247450,19248152-19248249,
19248348-19248721
Length = 1029
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +2
Query: 92 DLQDSTVVLVARCSGKGAEMQVHRSDDNPEVNRLVDNN 205
D+Q + L A+CS K E+++ +D+ +L N
Sbjct: 666 DMQQTITKLTAQCSEKAFELELRSADNRVLQEQLQQKN 703
>10_03_0006 +
6929237-6929304,6929581-6929603,6929609-6929710,
6929752-6930207,6930237-6930538,6930628-6930717,
6931379-6931471
Length = 377
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +2
Query: 119 VARCSGKGAEMQVHRSDDNPEVNRLVDNNPF 211
+A+C+ +G + ++H S V +V NPF
Sbjct: 293 LAKCAAQGCKWRIHASVVADGVTIMVKTNPF 323
>08_02_1035 - 23840606-23841109,23841194-23841199
Length = 169
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +1
Query: 133 WQRSGDAGPQIGRQSGGEQTGG 198
W GD G G + GG TGG
Sbjct: 81 WAAGGDTGATAGGRVGGVATGG 102
>08_02_0186 + 13965960-13966424
Length = 154
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = -3
Query: 197 PPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNPCINIYSC 69
P +CS C+P G P+ S PP + P P + C
Sbjct: 46 PTICSGEGCQPPPGQPLPIYGYPSPPPPSQ--PAGPSSHTPPC 86
>07_03_1107 - 24024387-24024497,24025799-24026410
Length = 240
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -3
Query: 197 PPVCSPPDCRPICGPASPLLCQSSVPPTQ 111
PP SPP P+ P SP + PT+
Sbjct: 107 PPASSPPVEAPVASPPSPAAEAPATIPTK 135
>07_03_1095 + 23926977-23927657
Length = 226
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -3
Query: 125 VPPTQRCYPVNPCINIYSCY 66
V P+QR Y + C +Y CY
Sbjct: 90 VKPSQRAYECSVCGKVYWCY 109
>05_05_0320 +
24085600-24086458,24087025-24087171,24087265-24087395,
24087536-24087746,24087834-24088071,24088757-24088931
Length = 586
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -3
Query: 197 PPVCSPPDCRPICGPASPLLCQS 129
PP SPP CRP P LLC S
Sbjct: 3 PPPPSPP-CRPRVKPERALLCFS 24
>04_04_0110 + 22840636-22840720,22840958-22841310
Length = 145
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/37 (32%), Positives = 15/37 (40%)
Frame = -3
Query: 179 PDCRPICGPASPLLCQSSVPPTQRCYPVNPCINIYSC 69
PDC CGP SP C+ + + C Y C
Sbjct: 99 PDCTHACGPCSP--CRRVMVSLRCAEAAESCPVAYRC 133
>04_03_0803 - 19835284-19836050,19836337-19836418
Length = 282
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = -3
Query: 188 CSPPDCRPICGPASPLLCQSSVPPTQRC 105
C DC CG P+ C PP RC
Sbjct: 208 CDHADCGGWCGGQPPINCPPP-PPPSRC 234
>04_03_0801 - 19828175-19828770,19828913-19828994
Length = 225
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/16 (56%), Positives = 11/16 (68%), Gaps = 2/16 (12%)
Frame = -3
Query: 194 PVCSPPDC--RPICGP 153
P CSPP C +P+C P
Sbjct: 190 PCCSPPPCPWQPVCPP 205
>03_02_0568 +
9514715-9514944,9515174-9515300,9515529-9515684,
9515765-9516102,9516191-9516329,9517083-9517152,
9517201-9517307,9517387-9517437,9517549-9517660,
9517783-9517869,9517958-9518133,9518479-9518586,
9518654-9518812,9518888-9518971,9519053-9519258,
9519565-9519666,9519768-9519877,9519963-9520114,
9520380-9520548,9520841-9520878,9521963-9522571,
9523314-9523784,9523786-9523871,9524396-9524906,
9525388-9525412,9526001-9526051,9526228-9526301,
9526412-9526534,9526667-9526738,9526924-9527020,
9527174-9527283
Length = 1649
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 132 EQRATNTTVLSCKSLHQHIQLLHS 61
EQRA + +SC L + + +LHS
Sbjct: 83 EQRANVQSAISCDDLKREVTVLHS 106
>02_05_0805 - 31859201-31860151
Length = 316
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 200 CPPVCSPPDCRPICGPASPLLCQSSVPPT 114
CP C+ P +P+ GP +P L VPP+
Sbjct: 196 CPGQCAWPFHQPVYGPQTPAL----VPPS 220
>02_05_0690 -
30943184-30943305,30944048-30944459,30944549-30944610,
30944724-30944787,30944880-30944947,30945039-30945168,
30945276-30945341,30945794-30946369
Length = 499
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 69 LHSNYVTQWSDFYSEFKNG 13
L ++YV W +YSEF G
Sbjct: 464 LFAHYVEAWKSWYSEFAQG 482
>12_01_0382 + 2995263-2995673
Length = 136
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 212 KMGYCPPVCSPPDCRPICGPASPLL 138
K G CP VCS P P G +P+L
Sbjct: 48 KCGTCPTVCSSPP-PPASGNYNPVL 71
>12_01_0301 - 2280215-2281154,2281271-2281338
Length = 335
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -3
Query: 119 PTQRCYPVNPCINIYSC 69
PTQ C+ IN YSC
Sbjct: 119 PTQVCFAAEAMINTYSC 135
>10_03_0035 -
7265037-7265455,7265684-7265812,7265909-7265951,
7266321-7266344
Length = 204
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/37 (29%), Positives = 15/37 (40%)
Frame = -3
Query: 197 PPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNPC 87
PP PP P A +C + V P + C + C
Sbjct: 122 PPPPPPPQPAPAARAAFGTICGAGVAPGRACLCLGQC 158
>06_03_0541 -
21944696-21944851,21944939-21945142,21945438-21947472,
21947644-21947720,21948289-21948477,21949188-21949448,
21949527-21949632,21951330-21951517,21951814-21951971,
21952015-21952840,21952947-21953210
Length = 1487
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 118 GGTLLWQRSGDAGPQIGRQSGGEQTGG 198
GGT +RSG G Q+ +G E+ GG
Sbjct: 178 GGTAQEKRSGGIGMQLEVGNGKEELGG 204
>06_01_1090 - 8945909-8946125,8946607-8947562,8947733-8949835
Length = 1091
Score = 25.0 bits (52), Expect = 8.3
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -2
Query: 54 VTQWSDFYSEFKNG*K 7
+ +W FY+ FKNG K
Sbjct: 338 IDEWESFYTPFKNGPK 353
>06_01_1088 -
8926361-8927301,8927437-8927705,8927850-8929023,
8929132-8929399
Length = 883
Score = 25.0 bits (52), Expect = 8.3
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -2
Query: 54 VTQWSDFYSEFKNG*K 7
+ +W FY+ FKNG K
Sbjct: 299 IDEWESFYAPFKNGPK 314
>05_05_0288 -
23870228-23870965,23871515-23871584,23871662-23871749,
23871825-23871882,23871963-23872039,23872111-23872258
Length = 392
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 131 SGKGAEMQVHRSDDNPEVNRLVDNNPF 211
SGK ++ H DDN + R D N F
Sbjct: 363 SGKNLDLNTHNIDDNDQGYRHFDLNGF 389
>03_02_0994 -
13067254-13067379,13067483-13067521,13067824-13067893,
13068025-13068116,13068237-13068319,13068590-13068633,
13068682-13068800,13068883-13068915,13069152-13069239,
13069364-13069413
Length = 247
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = -3
Query: 143 LLCQSSVPPTQRCYPVNPCINIYSC 69
L+C + P Q CY C+ Y C
Sbjct: 50 LVCDTEQPVAQVCYNCGVCMGEYFC 74
>02_01_0435 - 3164421-3165032
Length = 203
Score = 25.0 bits (52), Expect = 8.3
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -3
Query: 176 DCRPICGPASPLLCQ 132
DCR CG +S +LC+
Sbjct: 139 DCRSYCGSSSSVLCE 153
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,185,435
Number of Sequences: 37544
Number of extensions: 151421
Number of successful extensions: 546
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 256259052
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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