Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10g01
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    38   0.002
SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         29   0.65 
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc...    26   6.1  

>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -3

Query: 821 RDPEIXAAFQDPEISAAFKDVTSNPANFIKYQNNPKIAAVIAKLQA 684
           +DPE+    QDP + A       NPA  +++  NP + + I KL A
Sbjct: 539 KDPEVLGILQDPAMQAILGQARENPAALMEHMKNPTVKSKIEKLIA 584



 Score = 25.8 bits (54), Expect = 8.0
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = -3

Query: 818 DPEIXAAFQDPEISAAFKDVTSNPANFIKYQNNPKIAAVIAKL 690
           +PE  +   D    A  + +  NP + +   N+P++  VI  L
Sbjct: 149 NPETASLLADSAFMAKLQKIQQNPGSIMAELNDPRMMKVIGML 191


>SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 19/77 (24%), Positives = 35/77 (45%)
 Frame = +1

Query: 319 IQVSIYNSQHFNIHKFFKSSDLLTVPLFDCLSNVGSRMTNNFR*QMKKNLIALNFSRSLN 498
           + V   N++H  +H   K + LLT+     +S      +N     +   L   NFS+SL 
Sbjct: 1   MDVDFANAKH-KLHCLLKKNFLLTIRFSSLVSIQYIPFSNRLYEIISIALNPCNFSKSLF 59

Query: 499 WYSTNIRSNIFYKQNLE 549
           W    I++++  K + +
Sbjct: 60  WLRKKIKNSVLLKTSFD 76


>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
           Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -1

Query: 652 AAFQVLVDPNLALDHGRPPMMTSDLINI 569
           A  Q LVDP LA D G  P    DL+ +
Sbjct: 375 ATCQSLVDPELADDEGANPTGLYDLVGV 402


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,108,348
Number of Sequences: 5004
Number of extensions: 56999
Number of successful extensions: 143
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)