Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10g01
(871 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0003 + 13079-13610,14005-14312,14364-14549,14620-14707,148... 70 3e-12
04_03_1036 - 21895764-21895817,21895928-21895975,21896051-218961... 47 2e-05
04_04_0639 + 26883810-26883821,26884131-26884307,26885276-268853... 30 2.8
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166... 29 3.7
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353... 28 8.5
08_02_1423 + 26975466-26975508,26976253-26976365,26976505-269765... 28 8.5
05_01_0486 - 4047055-4049013 28 8.5
>02_01_0003 +
13079-13610,14005-14312,14364-14549,14620-14707,
14807-14887,14980-15044,15357-15497,15578-15694,
15995-16237,16326-16383,18127-18224
Length = 638
Score = 69.7 bits (163), Expect = 3e-12
Identities = 31/64 (48%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = -3
Query: 869 GGMPAGVNLD-DFNDMFRDPEIXAAFQDPEISAAFKDVTSNPANFIKYQNNPKIAAVIAK 693
G MP GV + D + + DP++ AAF DPE+ AA +DV +NPA+F ++Q NPK+ +IAK
Sbjct: 570 GAMPGGVPGNVDMSKILNDPDLMAAFGDPEVMAALQDVMNNPASFARHQANPKVGPIIAK 629
Query: 692 LQAK 681
+ AK
Sbjct: 630 MMAK 633
>04_03_1036 -
21895764-21895817,21895928-21895975,21896051-21896154,
21896624-21896721,21897838-21897916,21898039-21898102,
21898176-21898294,21898434-21898686,21899273-21899279,
21899956-21900013,21900300-21900353,21900863-21901055
Length = 376
Score = 47.2 bits (107), Expect = 2e-05
Identities = 18/43 (41%), Positives = 28/43 (65%)
Frame = -3
Query: 818 DPEIXAAFQDPEISAAFKDVTSNPANFIKYQNNPKIAAVIAKL 690
+PE+ AFQ+P+I A D + NP N +KYQN+ ++ V K+
Sbjct: 325 NPEVAVAFQNPKIQTAIMDCSQNPLNIVKYQNDKEVMDVFMKI 367
>04_04_0639 +
26883810-26883821,26884131-26884307,26885276-26885339,
26886614-26887734,26888193-26888481,26888528-26888658,
26888910-26889133,26889220-26889286,26889744-26889803,
26889896-26889979,26890290-26890301
Length = 746
Score = 29.9 bits (64), Expect = 2.8
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = -3
Query: 833 NDMFRDPEIXAAFQDPEISAAFKDVTSNPANFIKYQNNPKIAAVIAKLQ 687
N +DPEI +DP + D NP + NP + I KL+
Sbjct: 696 NKAMQDPEIQNILKDPIMQQVLTDFQENPKAAQAHLKNPGVMQKIQKLK 744
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = -3
Query: 827 MFRDPEIXAAFQDPEISAAFKDVTSNPANFIKYQNNPKIAAVIA 696
M DP P+ +DV NP++ Y ++P++ V++
Sbjct: 304 MAADPTTRPYLDQPDFMRMLRDVQRNPSSLNNYLSDPRMVQVLS 347
>02_05_0110 +
25914110-25915006,25915726-25915797,25916411-25916699,
25916864-25916949,25917267-25917490,25917674-25917740,
25917830-25917889,25917995-25918078,25918475-25918555
Length = 619
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -3
Query: 818 DPEIXAAFQDPEISAAFKDVTSNPANFIKYQNNPKIAAVIA-KLQAKLGR 672
DP A + P+ +DV NP++ Y ++P++ V+ L K+ R
Sbjct: 148 DPTTRAYLEQPDFMQMLRDVQRNPSSLNMYLSDPRMMQVLGLMLNIKIQR 197
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = -3
Query: 833 NDMFRDPEIXAAFQDPEISAAFKDVTSNPANFIKYQNNPKIAAVIAKL 690
N +DPEI DP + D+ NP ++ NP + I KL
Sbjct: 546 NKAMQDPEIQNILTDPIMRQVLVDLQENPRASQEHLKNPGVMQKIQKL 593
>09_02_0048 -
3532663-3533475,3534086-3534589,3534715-3535740,
3536083-3536226,3536974-3537375,3537499-3537721,
3537830-3542368,3542480-3542599,3543005-3543038,
3543922-3544102,3544198-3544815,3545022-3551098,
3551139-3551304,3551508-3551614,3552056-3552178,
3553417-3553642
Length = 5100
Score = 28.3 bits (60), Expect = 8.5
Identities = 17/52 (32%), Positives = 30/52 (57%)
Frame = -3
Query: 443 KLFVILEPTLLKQSNNGTVKRSLDLKNLCILKCCELYIET*M*DSISFHNIT 288
K+FV LL+++N+ + SLDL N C + C ++E + ++FH+ T
Sbjct: 720 KVFVQYVGYLLEKANDKS-SSSLDLNNFCRILPCAFHLEILL---VAFHSTT 767
>08_02_1423 +
26975466-26975508,26976253-26976365,26976505-26976561,
26976607-26976801,26976912-26977060,26977145-26977307,
26977865-26977957,26978075-26978158,26978865-26979004,
26979093-26979192
Length = 378
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -3
Query: 794 QDPEISAAFKDV-TSNPANFIKYQNNPKIAAVIAKLQAKLG 675
+DP + + ++ T +PA IKY N+P+ I++ LG
Sbjct: 165 EDPAVKSIMDELETGDPAALIKYWNDPETFRKISQAMGPLG 205
>05_01_0486 - 4047055-4049013
Length = 652
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -2
Query: 360 MYIEMLRIIYRNLNVRFYFIS*YNFLTVFFLIIAYVFIKRA-TYMHL 223
++IE+ I+ RFY++ + F+ +F L+I + TYMHL
Sbjct: 523 LFIELFFILSSIWLGRFYYVFGFLFIVLFLLVIVCGEVSLVLTYMHL 569
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,249,415
Number of Sequences: 37544
Number of extensions: 297495
Number of successful extensions: 553
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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