Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10g01
         (871 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83241-3|CAB05818.1|  422|Caenorhabditis elegans Hypothetical pr...    73   3e-13
Z81120-9|CAB03349.1|  422|Caenorhabditis elegans Hypothetical pr...    73   3e-13
Z49909-15|CAF31470.1|  697|Caenorhabditis elegans Hypothetical p...    28   7.5  
Z49909-14|CAA90116.2|  717|Caenorhabditis elegans Hypothetical p...    28   7.5  
AF016422-4|AAG24172.1|  320|Caenorhabditis elegans Hypothetical ...    28   10.0 

>Z83241-3|CAB05818.1|  422|Caenorhabditis elegans Hypothetical
           protein T12D8.8 protein.
          Length = 422

 Score = 72.9 bits (171), Expect = 3e-13
 Identities = 33/63 (52%), Positives = 42/63 (66%)
 Frame = -3

Query: 869 GGMPAGVNLDDFNDMFRDPEIXAAFQDPEISAAFKDVTSNPANFIKYQNNPKIAAVIAKL 690
           GG P G+       +F DPEI AA QDPE+  A  D+  NPAN +KY NNPK+A +I+KL
Sbjct: 310 GGAPGGMGAG-IEQLFSDPEIAAAIQDPEVLPALMDIMQNPANMMKYINNPKVAKLISKL 368

Query: 689 QAK 681
           Q+K
Sbjct: 369 QSK 371


>Z81120-9|CAB03349.1|  422|Caenorhabditis elegans Hypothetical
           protein T12D8.8 protein.
          Length = 422

 Score = 72.9 bits (171), Expect = 3e-13
 Identities = 33/63 (52%), Positives = 42/63 (66%)
 Frame = -3

Query: 869 GGMPAGVNLDDFNDMFRDPEIXAAFQDPEISAAFKDVTSNPANFIKYQNNPKIAAVIAKL 690
           GG P G+       +F DPEI AA QDPE+  A  D+  NPAN +KY NNPK+A +I+KL
Sbjct: 310 GGAPGGMGAG-IEQLFSDPEIAAAIQDPEVLPALMDIMQNPANMMKYINNPKVAKLISKL 368

Query: 689 QAK 681
           Q+K
Sbjct: 369 QSK 371


>Z49909-15|CAF31470.1|  697|Caenorhabditis elegans Hypothetical
           protein C14A4.12b protein.
          Length = 697

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/49 (26%), Positives = 28/49 (57%)
 Frame = -2

Query: 369 KKLMYIEMLRIIYRNLNVRFYFIS*YNFLTVFFLIIAYVFIKRATYMHL 223
           +KL ++     ++  L+V    +S +NF+T+   ++  +F   ATY+H+
Sbjct: 399 QKLPFLTAFLALFTGLSV----LSKFNFITIAISLVLGIFSINATYLHI 443


>Z49909-14|CAA90116.2|  717|Caenorhabditis elegans Hypothetical
           protein C14A4.12a protein.
          Length = 717

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/49 (26%), Positives = 28/49 (57%)
 Frame = -2

Query: 369 KKLMYIEMLRIIYRNLNVRFYFIS*YNFLTVFFLIIAYVFIKRATYMHL 223
           +KL ++     ++  L+V    +S +NF+T+   ++  +F   ATY+H+
Sbjct: 419 QKLPFLTAFLALFTGLSV----LSKFNFITIAISLVLGIFSINATYLHI 463


>AF016422-4|AAG24172.1|  320|Caenorhabditis elegans Hypothetical
           protein R09E12.3 protein.
          Length = 320

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = -3

Query: 818 DPEIXAAFQDPEISAAFKDVTSNPANFIKYQNNPKIAAVIAKLQ 687
           DPE+    +DP +    + ++++P    ++  NP+I   + KL+
Sbjct: 269 DPEVQEILRDPGMRMILEQMSNDPGAVREHLKNPEIFQKLMKLR 312


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,958,473
Number of Sequences: 27780
Number of extensions: 313844
Number of successful extensions: 748
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)