Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10f24
(782 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1065 + 9427870-9427974,9428069-9428121,9428994-9429173,942... 34 0.11
07_03_0103 - 13425411-13425713,13425874-13425974,13426410-134264... 31 0.78
08_01_0345 + 3055522-3055827,3055968-3056022,3056744-3056919,305... 29 5.5
04_04_0348 + 24568834-24568904,24569019-24569148,24569310-245694... 29 5.5
03_02_0812 - 11439258-11439409,11439537-11439612,11439860-114400... 29 5.5
10_08_0898 + 21424379-21424792,21424974-21425723 28 7.3
10_01_0204 + 2199778-2200835,2201212-2201311 28 7.3
04_04_1228 + 31888350-31892228,31892568-31893298,31893511-318935... 28 7.3
03_02_0710 + 10587969-10588069,10588181-10588262,10588362-105884... 28 7.3
03_02_0644 + 10118790-10119559,10120252-10120432,10120526-101207... 28 7.3
02_03_0359 + 18098043-18098435,18098526-18098642,18098913-18099032 28 7.3
10_08_0019 - 14167952-14171059 28 9.6
>07_01_1065 +
9427870-9427974,9428069-9428121,9428994-9429173,
9429252-9429492
Length = 192
Score = 34.3 bits (75), Expect = 0.11
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -3
Query: 378 ENLCNVFK-YYGVDKYLTSSGLTVLPEHRGQNIGARLFAAREPL 250
+N ++ K GVD+YL SG+ VLP R + +G L A E L
Sbjct: 85 QNEADILKNLQGVDEYLYVSGIAVLPSFRRRKVGTALLKACEAL 128
>07_03_0103 -
13425411-13425713,13425874-13425974,13426410-13426471,
13426951-13427123
Length = 212
Score = 31.5 bits (68), Expect = 0.78
Identities = 19/54 (35%), Positives = 23/54 (42%)
Frame = -2
Query: 307 ARAPRSEHRSQTLRGQRAPGKRSWHRGDCYRLHGHHVPGLGSEVWLRDVSGTKI 146
AR PR+ QTL G A + + G CYR G H G G LR +
Sbjct: 7 ARLPRATPHLQTLGGGAARRQSAAGAGPCYRAEGGHCHG-GRRPTLRQAKAVSV 59
>08_01_0345 + 3055522-3055827,3055968-3056022,3056744-3056919,
3057104-3057232,3057313-3057572,3057688-3058001,
3058268-3058491,3058862-3059214,3059489-3059916,
3060031-3061514
Length = 1242
Score = 28.7 bits (61), Expect = 5.5
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +1
Query: 214 DGSSRLYAKSVSQGLSGREESGSDVLTSVLGQHREPARGQVLVHAV-VFEYVAQILR 381
DG S L G +G + S+L + +P RGQVLV V EY + LR
Sbjct: 1008 DGFSLAIEPGQRVALVGPSGAGKSTIVSLLLRFYDPCRGQVLVDGKDVREYNLRFLR 1064
>04_04_0348 + 24568834-24568904,24569019-24569148,24569310-24569459,
24569546-24569650,24569808-24570029,24570162-24570274,
24570371-24570470,24571125-24571325,24571401-24571549,
24571624-24571765,24571851-24571991,24572098-24572286,
24572622-24572835,24573198-24573291,24573671-24573905,
24574242-24574433,24574919-24575017,24575443-24575532,
24575709-24575912,24575994-24576269,24576974-24577096,
24577453-24577608,24577686-24577802,24577878-24577957,
24578173-24578377,24578485-24578687,24578882-24578933
Length = 1350
Score = 28.7 bits (61), Expect = 5.5
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -3
Query: 471 VLVKSIDDIDEDLDTVKGESWKKLLRTLIEAENLCNVFKYYGVDKYLTSS 322
V+VK I ++ + + GE K + L+E NL V GVD T S
Sbjct: 1168 VIVKGIPTVERAVISETGEENDKRYKLLVEGTNLLAVMGTPGVDAMKTKS 1217
>03_02_0812 -
11439258-11439409,11439537-11439612,11439860-11440076,
11440150-11440350,11440673-11440872,11440955-11441075,
11441596-11441636,11441714-11441822,11442037-11442281,
11442382-11442496,11442970-11443064,11444279-11444535,
11444780-11444999,11445473-11445556
Length = 710
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +2
Query: 572 VSIETGSLLISNTSQSGSSLKKVLFINSKH--FSFASSMSLIW 694
V + T ++++ + S SS+ K+LF+N H F+ A IW
Sbjct: 660 VHLVTTTVVLESLPLSNSSVGKILFVNKSHGLFAIAGGQVGIW 702
>10_08_0898 + 21424379-21424792,21424974-21425723
Length = 387
Score = 28.3 bits (60), Expect = 7.3
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -1
Query: 419 ANPGRSCLGH**KRRICATYSNTTAWTST*PRAGSRCCPSTEVRTSE-PDSSRP 261
A PGR +R AT + AW S PR S+ PS+ +S+ P S++P
Sbjct: 194 AAPGRGARS----KRSRATAAAAAAWHSLVPRPPSQSSPSSSCSSSDFPSSNKP 243
>10_01_0204 + 2199778-2200835,2201212-2201311
Length = 385
Score = 28.3 bits (60), Expect = 7.3
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +1
Query: 196 GRGGREDGSSRLYAKSVSQGLSGREESGSDVLTSVLGQHREPARGQV 336
GRGGRE ++R A+ G+ R S +L + R P RG V
Sbjct: 313 GRGGRESATARAGARVSRAGV--RPSPASSILVVHRHRRRRPRRGVV 357
>04_04_1228 +
31888350-31892228,31892568-31893298,31893511-31893586,
31894089-31894164,31894571-31894656,31895414-31895482,
31895579-31895588,31895711-31896207
Length = 1807
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = -3
Query: 513 EVDGEPDELVGFNIVLVKSIDDIDEDLDTVKGESWKKLLRTLIEAENLCNV 361
E DG P+EL+ + + + +D D+ + + WKKLL L + + N+
Sbjct: 382 EKDGRPEELIEQRLKSKRFLLILD-DIWKCQSDDWKKLLLPLTKGQTKGNI 431
>03_02_0710 +
10587969-10588069,10588181-10588262,10588362-10588414,
10588828-10589315,10589415-10589575,10589699-10589896,
10590091-10590277,10590355-10590611
Length = 508
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 235 HRGDCYRLHGHHVPGLGSEVWLRDVSGTKILRHVKV 128
HRG+ Y+ H H P L +VW + G + H K+
Sbjct: 238 HRGEVYKKH--HPPALADDVWRLEKIGKDGVFHKKL 271
>03_02_0644 +
10118790-10119559,10120252-10120432,10120526-10120725,
10120834-10120992,10122375-10122741
Length = 558
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/42 (26%), Positives = 29/42 (69%)
Frame = -3
Query: 657 LELMKSTFLRDEPLCDVLEINRDPVSIETIMKNWEEYVAQNV 532
++++K +F D+ + +E++R PV+ + ++K W ++V +N+
Sbjct: 381 MKVLKGSF--DQGATEYVEVDR-PVAYKEVLKTWAKWVDRNI 419
>02_03_0359 + 18098043-18098435,18098526-18098642,18098913-18099032
Length = 209
Score = 28.3 bits (60), Expect = 7.3
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Frame = -2
Query: 319 AHGAARAPRSEHRSQTL-RGQRAPGKRSWHRGDCYRLHGHHVPG-LGSEVWLRDVSGTKI 146
AH + RS+T + A G+RSWH G HGH P L + + V+ K
Sbjct: 123 AHRRCVSVEFSKRSRTRSKASEADGQRSWHNG-----HGHWFPDMLSNGSTMEVVNSVKE 177
Query: 145 LRHVKVRNKSD-*MHH 101
H R S MHH
Sbjct: 178 KHHSFQRMHSHWHMHH 193
>10_08_0019 - 14167952-14171059
Length = 1035
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 323 AGSRCCPSTEVRTSEPDSSRPESPW 249
+G RC PST TS ++ RPE W
Sbjct: 10 SGRRCSPSTSTSTSR-EAWRPEKQW 33
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,272,015
Number of Sequences: 37544
Number of extensions: 379490
Number of successful extensions: 1248
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1248
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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