Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10f24
(782 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68337-8|CAA92749.2| 241|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z92808-1|CAB07266.2| 606|Caenorhabditis elegans Hypothetical pr... 29 5.0
Z81476-3|CAB03922.3| 592|Caenorhabditis elegans Hypothetical pr... 29 5.0
AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosenso... 29 5.0
AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosenso... 29 5.0
AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensor... 29 5.0
AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensor... 29 5.0
AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensor... 29 5.0
AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensor... 29 5.0
AF003141-12|AAP68910.1| 946|Caenorhabditis elegans Hypothetical... 28 6.6
AF003141-11|AAP68909.1| 1437|Caenorhabditis elegans Hypothetical... 28 6.6
>Z68337-8|CAA92749.2| 241|Caenorhabditis elegans Hypothetical
protein M7.12 protein.
Length = 241
Score = 29.1 bits (62), Expect = 3.7
Identities = 49/210 (23%), Positives = 93/210 (44%), Gaps = 12/210 (5%)
Frame = -3
Query: 675 DAKEKCLELMKSTFLRDEPLCDVLEINRDPVSIETIMKNWEEYVAQN-VSLACYTEVDGE 499
D + + ++ + + F +EPL + I++ E V +N VS+ ++ +
Sbjct: 32 DNRNEVVDFLNNNFRVEEPLSKAAGMTES--DIQSCFDGVFERVLKNEVSILARSK---Q 86
Query: 498 PDELVGFNIVLVKSIDDIDEDLDTVKGESW---KKLLRTLIEAEN-LCNVFKYYGVDKY- 334
DE+VG + V +D ++ D + + +K + T+ E N L F D++
Sbjct: 87 SDEIVGCMLNSVWKRNDPKKNEDEAEDFEFGGDRKGVMTIGEILNELHESFWKLRPDQHT 146
Query: 333 -LTSSGLTVLPEHRGQNIGARLFAAREPLGNALGIEATATVFTATT--SQVLAAKCGYET 163
L +V H+ Q + ++ E +EA++ V A++ +Q+L +K GYET
Sbjct: 147 VLHFEISSVNKNHQRQGLASKFMNWTEKKELLKSVEASSIVAEASSLANQILLSKRGYET 206
Query: 162 LAELKYSDMLKF-GINLTECT--TDRAKLM 82
+A S + G + C TDR L+
Sbjct: 207 VASTLLSSRIDVNGKQILVCDDGTDRVDLV 236
>Z92808-1|CAB07266.2| 606|Caenorhabditis elegans Hypothetical
protein M04C3.2 protein.
Length = 606
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -3
Query: 417 ESWKKLLRTLIEAENLCNVFKYYGVDK 337
ESWKKLL L+E ++L + Y DK
Sbjct: 294 ESWKKLLEKLLEKDDLVIHYFYRNEDK 320
>Z81476-3|CAB03922.3| 592|Caenorhabditis elegans Hypothetical
protein C25F9.4 protein.
Length = 592
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -3
Query: 417 ESWKKLLRTLIEAENLCNVFKYYGVDK 337
ESWKKLL L+E ++L + Y DK
Sbjct: 293 ESWKKLLEKLLEKDDLVIHYFYRNEDK 319
>AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform g protein.
Length = 1604
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = -3
Query: 459 SIDDIDEDLDTVKGESWKKLLRTLIEAENLCNVFKYYGVDK----YLTSSGLTVLPEHRG 292
S D I E + +GE + +LR + +NL + Y+G+D Y GL+ + +
Sbjct: 1529 SADCISESYRSTEGEEYCNILRPFLRGQNLYSF--YFGLDSVNPMYRPKDGLSGRIQRKN 1586
Query: 291 QNIGARL 271
+ I A L
Sbjct: 1587 ETIAAVL 1593
>AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform f protein.
Length = 1818
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = -3
Query: 459 SIDDIDEDLDTVKGESWKKLLRTLIEAENLCNVFKYYGVDK----YLTSSGLTVLPEHRG 292
S D I E + +GE + +LR + +NL + Y+G+D Y GL+ + +
Sbjct: 1743 SADCISESYRSTEGEEYCNILRPFLRGQNLYSF--YFGLDSVNPMYRPKDGLSGRIQRKN 1800
Query: 291 QNIGARL 271
+ I A L
Sbjct: 1801 ETIAAVL 1807
>AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform e protein.
Length = 1954
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = -3
Query: 459 SIDDIDEDLDTVKGESWKKLLRTLIEAENLCNVFKYYGVDK----YLTSSGLTVLPEHRG 292
S D I E + +GE + +LR + +NL + Y+G+D Y GL+ + +
Sbjct: 1879 SADCISESYRSTEGEEYCNILRPFLRGQNLYSF--YFGLDSVNPMYRPKDGLSGRIQRKN 1936
Query: 291 QNIGARL 271
+ I A L
Sbjct: 1937 ETIAAVL 1943
>AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform d protein.
Length = 1995
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = -3
Query: 459 SIDDIDEDLDTVKGESWKKLLRTLIEAENLCNVFKYYGVDK----YLTSSGLTVLPEHRG 292
S D I E + +GE + +LR + +NL + Y+G+D Y GL+ + +
Sbjct: 1920 SADCISESYRSTEGEEYCNILRPFLRGQNLYSF--YFGLDSVNPMYRPKDGLSGRIQRKN 1977
Query: 291 QNIGARL 271
+ I A L
Sbjct: 1978 ETIAAVL 1984
>AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform h protein.
Length = 2006
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = -3
Query: 459 SIDDIDEDLDTVKGESWKKLLRTLIEAENLCNVFKYYGVDK----YLTSSGLTVLPEHRG 292
S D I E + +GE + +LR + +NL + Y+G+D Y GL+ + +
Sbjct: 1931 SADCISESYRSTEGEEYCNILRPFLRGQNLYSF--YFGLDSVNPMYRPKDGLSGRIQRKN 1988
Query: 291 QNIGARL 271
+ I A L
Sbjct: 1989 ETIAAVL 1995
>AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform a protein.
Length = 2007
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = -3
Query: 459 SIDDIDEDLDTVKGESWKKLLRTLIEAENLCNVFKYYGVDK----YLTSSGLTVLPEHRG 292
S D I E + +GE + +LR + +NL + Y+G+D Y GL+ + +
Sbjct: 1932 SADCISESYRSTEGEEYCNILRPFLRGQNLYSF--YFGLDSVNPMYRPKDGLSGRIQRKN 1989
Query: 291 QNIGARL 271
+ I A L
Sbjct: 1990 ETIAAVL 1996
>AF003141-12|AAP68910.1| 946|Caenorhabditis elegans Hypothetical
protein W02D3.10b protein.
Length = 946
Score = 28.3 bits (60), Expect = 6.6
Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
Frame = -3
Query: 693 QIRDMDDAKEKCLELMKSTFLRDEPLCDVLEINRDPVSIETIMKNWEEYVAQNVSLACYT 514
++RD+D E EL+ + D L + L+ D + E I E A + S
Sbjct: 199 KVRDIDQI-ELDDELLPGSDAADNILFEWLKTTEDVDAFELI----SEISASSSSGITTP 253
Query: 513 EVDGEPDELVGFNIVLVKSIDDIDEDLDTVKGESWKKL-LRTLIEAENL 370
+D DE++ I + S DD+D + +WK L L T E E L
Sbjct: 254 SIDRFCDEVIVEKIGIDTSSDDMDSERKRRSIMTWKSLILTTKTEKERL 302
>AF003141-11|AAP68909.1| 1437|Caenorhabditis elegans Hypothetical
protein W02D3.10a protein.
Length = 1437
Score = 28.3 bits (60), Expect = 6.6
Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
Frame = -3
Query: 693 QIRDMDDAKEKCLELMKSTFLRDEPLCDVLEINRDPVSIETIMKNWEEYVAQNVSLACYT 514
++RD+D E EL+ + D L + L+ D + E I E A + S
Sbjct: 199 KVRDIDQI-ELDDELLPGSDAADNILFEWLKTTEDVDAFELI----SEISASSSSGITTP 253
Query: 513 EVDGEPDELVGFNIVLVKSIDDIDEDLDTVKGESWKKL-LRTLIEAENL 370
+D DE++ I + S DD+D + +WK L L T E E L
Sbjct: 254 SIDRFCDEVIVEKIGIDTSSDDMDSERKRRSIMTWKSLILTTKTEKERL 302
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,660,758
Number of Sequences: 27780
Number of extensions: 330269
Number of successful extensions: 1046
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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